Strain identifier
BacDive ID: 1678
Type strain:
Species: Beutenbergia cavernae
Strain Designation: 2163-026
Strain history: CIP <- 1999, I. Groth, Hans Knöll Inst., Jena, Germany: strain HKI 0122
NCBI tax ID(s): 471853 (strain), 84757 (species)
General
@ref: 4698
BacDive-ID: 1678
DSM-Number: 12333
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Beutenbergia cavernae 2163-026 is an aerobe, mesophilic bacterium that was isolated from cave, soil between rocks.
NCBI tax id
NCBI tax id | Matching level |
---|---|
471853 | strain |
84757 | species |
strain history
@ref | history |
---|---|
4698 | <- I. Groth <- Ch. Weigel; 2163-026 (= HKI 0122) |
67770 | CIP 106362 <-- I. Groth HKI 0122 (=strain 2163-026). |
117221 | CIP <- 1999, I. Groth, Hans Knöll Inst., Jena, Germany: strain HKI 0122 |
doi: 10.13145/bacdive1678.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Beutenbergiaceae
- genus: Beutenbergia
- species: Beutenbergia cavernae
- full scientific name: Beutenbergia cavernae Groth et al. 1999
@ref: 4698
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Beutenbergiaceae
genus: Beutenbergia
species: Beutenbergia cavernae
full scientific name: Beutenbergia cavernae Groth et al. 1999 emend. Nouioui et al. 2018
strain designation: 2163-026
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 91.8 | ||
69480 | 100 | positive | ||
117221 | no | positive | rod-shaped |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
19736 | Zinc yellow (1018) | 10-14 days | 5006 |
19736 | 10-14 days | ISP 2 | |
19736 | 10-14 days | ISP 3 | |
19736 | 10-14 days | ISP 4 | |
117221 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
19736 | no | 5006 |
19736 | no | ISP 2 |
19736 | no | ISP 3 |
19736 | no | ISP 4 |
multimedia
- @ref: 66793
- multimedia content: EM_DSM_12333_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4698 | RICH MEDIUM (DSMZ Medium 736) | yes | https://mediadive.dsmz.de/medium/736 | Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water |
19736 | 5006 | yes | Medium: 5006 Name: Composition (g/l) Sucrose 3,0 Dextrin 15,0 Meat extract 1,0 Yeast extract 2,0 Tryptone soy broth (Oxoid) 5,0 NaCl 0,5 K2HPO4 0,5 MgSO4 x 7 H2O 0,5 FeSO4 x 7 H2O 0,01 Agar 20,0 Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7,3 Usage: Maintenance Organisms: All Actinomycetes | |
19736 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
19736 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
19736 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
32959 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
117221 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19736 | positive | optimum | 28 | mesophilic |
4698 | positive | growth | 28 | mesophilic |
32959 | positive | growth | 30 | mesophilic |
55688 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
117221 | positive | growth | 15-37 | |
117221 | no | growth | 10 | psychrophilic |
117221 | no | growth | 41 | thermophilic |
117221 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
55688 | aerobe |
117221 | obligate aerobe |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.882
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
19736 | NaCl | positive | maximum | 5 % |
117221 | NaCl | positive | growth | 2-4 % |
117221 | NaCl | no | growth | 6 % |
117221 | NaCl | no | growth | 8 % |
117221 | NaCl | no | growth | 10 % |
murein
- @ref: 4698
- murein short key: A11.54
- type: A4alpha L-Lys-L-Glu
observation
- @ref: 67770
- observation: quinones: MK-8(H4), MK-8(2)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
19736 | 62968 | cellulose | + | |
19736 | 16634 | raffinose | + | |
19736 | 26546 | rhamnose | + | |
19736 | 28757 | fructose | + | |
19736 | 29864 | mannitol | + | |
19736 | 17268 | myo-inositol | + | |
19736 | 18222 | xylose | + | |
19736 | 17992 | sucrose | + | |
19736 | 22599 | arabinose | + | |
19736 | 17234 | glucose | + | |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | + | builds acid from |
68371 | 18333 | D-arabitol | + | builds acid from |
68371 | 18287 | L-fucose | + | builds acid from |
68371 | 28847 | D-fucose | + | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | + | builds acid from |
68371 | 32528 | turanose | + | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | + | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | + | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | + | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | + | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | + | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | + | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | + | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | + | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | + | builds acid from |
68371 | 17108 | D-arabinose | + | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | + | builds acid from |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
117221 | 16947 | citrate | - | carbon source |
117221 | 4853 | esculin | + | hydrolysis |
117221 | 606565 | hippurate | - | hydrolysis |
117221 | 17632 | nitrate | + | reduction |
117221 | 16301 | nitrite | - | reduction |
68379 | 17632 | nitrate | - | reduction |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | + | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | - | fermentation |
antibiotic resistance
- @ref: 117221
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
117221 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
117221 | 15688 | acetoin | - | ||
117221 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
117221 | oxidase | - | |
117221 | beta-galactosidase | - | 3.2.1.23 |
117221 | alcohol dehydrogenase | - | 1.1.1.1 |
117221 | gelatinase | +/- | |
117221 | amylase | - | |
117221 | DNase | - | |
117221 | caseinase | + | 3.4.21.50 |
117221 | catalase | + | 1.11.1.6 |
117221 | tween esterase | - | |
117221 | gamma-glutamyltransferase | - | 2.3.2.2 |
117221 | lecithinase | - | |
117221 | lipase | - | |
117221 | lysine decarboxylase | - | 4.1.1.18 |
117221 | ornithine decarboxylase | - | 4.1.1.17 |
117221 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
117221 | protease | - | |
117221 | tryptophan deaminase | - | |
117221 | urease | - | 3.5.1.5 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19736 | - | - | - | + | - | + | + | - | +/- | + | - | - | - | - | - | + | - | + | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
19736 | + | - | - | - | + | - | - | - | - | + | + | + | + | - | + | - | + | + | - | |
117221 | + | + | + | - | + | - | - | - | - | + | + | + | + | - | + | - | + | + | + | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
19736 | - | - | - | - | - | - | + | - | - | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117221 | + | - | + | + | + | + | - | + | - | + | + | + | + | - | + | - | - | - | - | + | - | - | - | - | + | + | + | + | + | + | + | + | - | - | + | - | - | + | + | + | + | - | + | + | + | + | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
4698 | cave, soil between rocks | China, Guilin, "cave of the reed flutes" | China | CHN | Asia | |
55688 | Cave,soil between rocks | China | CHN | Asia | ||
67770 | Soil between rocks, Reed Flute Cave | near Guilin Guangxi | China | CHN | Asia | |
117221 | Environment, Soil, cellar | Guilin | China | CHN | Asia | 1997 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Geologic |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_2096.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1152;97_1352;98_1639;99_2096&stattab=map
- Last taxonomy: Beutenbergia cavernae subclade
- 16S sequence: Y18378
- Sequence Identity:
- Total samples: 866
- soil counts: 443
- aquatic counts: 228
- animal counts: 157
- plant counts: 38
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
4698 | 1 | Risk group (German classification) |
19736 | 1 | Risk group (German classification) |
117221 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 4698
- description: Beutenbergia cavernosa 16S rRNA gene
- accession: Y18378
- length: 1485
- database: ena
- NCBI tax ID: 471853
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Beutenbergia cavernae DSM 12333 | GCA_000023105 | complete | ncbi | 471853 |
66792 | Beutenbergia cavernae DSM 12333 | 471853.5 | complete | patric | 471853 |
66792 | Beutenbergia cavernae HKI 0122, DSM 12333 | 643692008 | complete | img | 471853 |
GC content
@ref | GC-content | method |
---|---|---|
4698 | 71.4 | high performance liquid chromatography (HPLC) |
67770 | 71 | high performance liquid chromatography (HPLC) |
67770 | 73.12 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 76 | no |
motile | no | 90.99 | no |
flagellated | no | 98.579 | no |
gram-positive | yes | 90.8 | no |
anaerobic | no | 99.063 | yes |
aerobic | yes | 92.109 | yes |
halophile | no | 92.533 | no |
spore-forming | no | 90.084 | no |
thermophile | no | 98.029 | no |
glucose-util | yes | 87.239 | no |
glucose-ferment | no | 86.913 | yes |
External links
@ref: 4698
culture collection no.: DSM 12333, ATCC BAA 8, IFO 16432, NBRC 16432, CCUG 43141, HKI 0122, JCM 11478, CIP 106362, NCIMB 13614
straininfo link
- @ref: 71325
- straininfo: 44250
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10555355 | Beutenbergia cavernae gen. nov., sp. nov., an L-lysine-containing actinomycete isolated from a cave. | Groth I, Schumann P, Schuetze B, Augsten K, Kramer I, Stackebrandt E | Int J Syst Bacteriol | 10.1099/00207713-49-4-1733 | 1999 | Actinomycetales/*chemistry/*classification/isolation & purification/physiology, Bacterial Typing Techniques, Cell Wall/chemistry, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Ecosystem, Lipids/analysis, Lysine/*analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
Genetics | 21304633 | Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122). | Land M, Pukall R, Abt B, Goker M, Rohde M, Glavina Del Rio T, Tice H, Copeland A, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Hauser L, Chang YJ, Jefferies CC, Saunders E, Brettin T, Detter JC, Han C, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A | Stand Genomic Sci | 10.4056/sigs.1162 | 2009 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4698 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12333) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12333 | |||
19736 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM12333.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
32959 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18484 | ||||
55688 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 43141) | https://www.ccug.se/strain?id=43141 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
71325 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44250.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
117221 | Curators of the CIP | Collection of Institut Pasteur (CIP 106362) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106362 |