Strain identifier
BacDive ID: 167728
Type strain:
Species: Acholeplasma equifetale
Strain Designation: C112
Strain history: <- D. V. Volokhov, US FDA/CBER; <- H. Kirchhoff, University of Veterinary Medicine Hannover, Germany; C112
NCBI tax ID(s): 1408415 (strain), 264634 (species)
General
@ref: 20215
BacDive-ID: 167728
DSM-Number: 116313
keywords: genome sequence, 16S sequence, Bacteria
description: Acholeplasma equifetale C112 is a bacterium that was isolated from isolated from lung of aborted horse fetus.
NCBI tax id
NCBI tax id | Matching level |
---|---|
264634 | species |
1408415 | strain |
strain history
- @ref: 124990
- history: <- D. V. Volokhov, US FDA/CBER; <- H. Kirchhoff, University of Veterinary Medicine Hannover, Germany; C112
doi: 10.13145/bacdive167728.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Acholeplasmatales
- family: Acholeplasmataceae
- genus: Acholeplasma
- species: Acholeplasma equifetale
- full scientific name: Acholeplasma equifetale Kirchoff 1974 (Approved Lists 1980)
@ref: 20215
domain: Bacteria
phylum: Mycoplasmatota
class: Mollicutes
order: Acholeplasmatales
family: Acholeplasmataceae
genus: Acholeplasma
species: Acholeplasma equifetale
full scientific name: Acholeplasma equifetale Kirchoff 1974 (Approved Lists 1980)
strain designation: C112
type strain: yes
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 91.5
Culture and growth conditions
culture medium
- @ref: 124990
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1076b.pdf
culture temp
- @ref: 124990
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 124990
- sample type: isolated from lung of aborted horse fetus
- geographic location: Hannover
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 52.3759
- longitude: 9.732
taxonmaps
- @ref: 69479
- File name: preview.99_16817.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_117;96_8628;97_10376;98_12726;99_16817&stattab=map
- Last taxonomy: Acholeplasma equifetale subclade
- 16S sequence: AY538165
- Sequence Identity:
- Total samples: 878
- soil counts: 182
- aquatic counts: 184
- animal counts: 356
- plant counts: 156
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
20215 | 1 | Risk group |
124990 | 1 | Risk group (German classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20215 | Acholeplasma equifetale 16S ribosomal RNA gene, partial sequence | AY538165 | 1408 | nuccore | 264634 |
124043 | Acholeplasma equifetale 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | AY744936 | 918 | nuccore | 264634 |
124043 | Acholeplasma equifetale strain ATCC 29724 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence. | AY765210 | 732 | nuccore | 264634 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acholeplasma equifetale ATCC 29724 | GCA_000687735 | contig | ncbi | 1408415 |
66792 | Acholeplasma equifetale ATCC 29724 | 1408415.3 | wgs | patric | 1408415 |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 65.918 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 76.857 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 84.912 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.912 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 89.7 | no |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 91.5 | no |
External links
@ref: 20215
culture collection no.: ATCC 29724, NCTC 10171, DSM 116313
straininfo link
- @ref: 115008
- straininfo: 39679
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
115008 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID39679.1 | |
124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
124990 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-116313 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 116313) |