Strain identifier

BacDive ID: 167728

Type strain: Yes

Species: Acholeplasma equifetale

Strain Designation: C112

Strain history: <- D. V. Volokhov, US FDA/CBER; <- H. Kirchhoff, University of Veterinary Medicine Hannover, Germany; C112

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 20215

BacDive-ID: 167728

DSM-Number: 116313

keywords: genome sequence, 16S sequence, Bacteria

description: Acholeplasma equifetale C112 is a bacterium that was isolated from isolated from lung of aborted horse fetus.

NCBI tax id

NCBI tax idMatching level
264634species
1408415strain

strain history

  • @ref: 124990
  • history: <- D. V. Volokhov, US FDA/CBER; <- H. Kirchhoff, University of Veterinary Medicine Hannover, Germany; C112

doi: 10.13145/bacdive167728.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/mycoplasmatota
  • domain: Bacteria
  • phylum: Mycoplasmatota
  • class: Mollicutes
  • order: Acholeplasmatales
  • family: Acholeplasmataceae
  • genus: Acholeplasma
  • species: Acholeplasma equifetale
  • full scientific name: Acholeplasma equifetale Kirchoff 1974 (Approved Lists 1980)

@ref: 20215

domain: Bacteria

phylum: Mycoplasmatota

class: Mollicutes

order: Acholeplasmatales

family: Acholeplasmataceae

genus: Acholeplasma

species: Acholeplasma equifetale

full scientific name: Acholeplasma equifetale Kirchoff 1974 (Approved Lists 1980)

strain designation: C112

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 91.5

Culture and growth conditions

culture medium

  • @ref: 124990
  • name: SP4-Z MEDIUM (DSMZ Medium 1076b)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1076b.pdf

culture temp

  • @ref: 124990
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 124990
  • sample type: isolated from lung of aborted horse fetus
  • geographic location: Hannover
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 52.3759
  • longitude: 9.732

taxonmaps

  • @ref: 69479
  • File name: preview.99_16817.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_117;96_8628;97_10376;98_12726;99_16817&stattab=map
  • Last taxonomy: Acholeplasma equifetale subclade
  • 16S sequence: AY538165
  • Sequence Identity:
  • Total samples: 878
  • soil counts: 182
  • aquatic counts: 184
  • animal counts: 356
  • plant counts: 156

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
202151Risk group
1249901Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20215Acholeplasma equifetale 16S ribosomal RNA gene, partial sequenceAY5381651408nuccore264634
124043Acholeplasma equifetale 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.AY744936918nuccore264634
124043Acholeplasma equifetale strain ATCC 29724 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence.AY765210732nuccore264634

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acholeplasma equifetale ATCC 29724GCA_000687735contigncbi1408415
66792Acholeplasma equifetale ATCC 297241408415.3wgspatric1408415

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes65.918no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no76.857no
69480spore-formingspore-formingAbility to form endo- or exosporesno84.912no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno93.912no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no89.7no
69480flagellatedmotile2+Ability to perform flagellated movementno91.5no

External links

@ref: 20215

culture collection no.: ATCC 29724, NCTC 10171, DSM 116313

straininfo link

  • @ref: 115008
  • straininfo: 39679

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
115008Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID39679.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
124990Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-116313Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 116313)