Strain identifier
BacDive ID: 167727
Type strain: 
Species: Paenibacillus puerhi
Strain Designation: SJY2
NCBI tax ID(s): 2692622 (species)
version 9.1 (current version)
General
@ref: 20215
BacDive-ID: 167727
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Paenibacillus puerhi SJY2 is a spore-forming bacterium of the family Paenibacillaceae.
NCBI tax id
- NCBI tax id: 2692622
- Matching level: species
doi: 10.13145/bacdive167727.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus puerhi
- full scientific name: Paenibacillus puerhi Yang et al. 2021
@ref: 20215
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus puerhi
full scientific name: Paenibacillus puerhi Yang et al. 2021
strain designation: SJY2
type strain: yes
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 93.202
Sequence information
16S sequences
- @ref: 20215
- description: Paenibacillus puerhi strain SJY2 16S ribosomal RNA gene, partial sequence
- accession: MN014063
- length: 1508
- database: nuccore
- NCBI tax ID: 2692622
Genome sequences
- @ref: 66792
- description: Paenibacillus puerhi SJY2
- accession: GCA_009846885
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2692622
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 66.206 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.096 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 63.527 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 93.202 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.35 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 83.022 | no |
External links
@ref: 20215
culture collection no.: CGMCC 1.17156, KCTC 43242
literature
- topic: Phylogeny
- Pubmed-ID: 33386866
- title: Paenibacillus puerhi sp. nov., isolated from the rhizosphere soil of Pu-erh tea plants (Camellia sinensis var. assamica).
- authors: Yang RJ, Zhou, Wang QM, Wang XH, Zhang WJ, Zhuang L, Wang XJ, Yan L, Lv J, Sheng J
- journal: Arch Microbiol
- DOI: 10.1007/s00203-020-02135-z
- year: 2021
- mesh: Benzoquinones/analysis, Camellia sinensis/*microbiology, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Genome, Bacterial/genetics, Paenibacillus/chemistry/*classification/genetics/physiology, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |