Strain identifier
BacDive ID: 16754
Type strain: 
Species: Seinonella peptonophila
Strain Designation: T-2
Strain history: <- M. Hayakawa <- H. Nonomura T-2
NCBI tax ID(s): 112248 (species)
version 8.1 (current version)
General
@ref: 11862
BacDive-ID: 16754
DSM-Number: 44666
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Seinonella peptonophila T-2 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 112248
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11862 | <- T. Kudo, JCM <- KCTC <- M. Hayakawa <- H. Nonomura; T-2 |
| 67770 | KCTC 9740 <-- M. Hayakawa <-- H. Nonomura T-2. |
| 67771 | <- M. Hayakawa <- H. Nonomura T-2 |
doi: 10.13145/bacdive16754.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermoactinomycetaceae
- genus: Seinonella
- species: Seinonella peptonophila
- full scientific name: Seinonella peptonophila (Nonomura and Ohara 1971) Yoon et al. 2005
synonyms
- @ref: 20215
- synonym: Thermoactinomyces peptonophilus
@ref: 11862
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Thermoactinomycetaceae
genus: Seinonella
species: Seinonella peptonophila
full scientific name: Seinonella peptonophila (Nonomura and Ohara 1971) Yoon et al. 2005
strain designation: T-2
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 67771 | positive | |
| 69480 | positive | 100 |
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 67770 | positive | growth | 35 | mesophilic |
| 67771 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
observation
- @ref: 67770
- observation: quinones: MK-7, MK-9, MK-10, MK-8
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 11862 | soil | Yamanashi Prefecture | Japan | JPN | Asia |
| 67770 | Soil | Yamanashi Pref. | Japan | JPN | Asia |
| 67771 | From soil | Yamanashi | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_170282.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_11974;96_63524;97_82386;98_111602;99_170282&stattab=map
- Last taxonomy: Seinonella peptonophila subclade
- 16S sequence: AF138735
- Sequence Identity:
- Total samples: 561
- soil counts: 381
- aquatic counts: 21
- animal counts: 95
- plant counts: 64
Safety information
risk assessment
- @ref: 11862
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Thermoactinomyces peptonophilus KCTC 9740 16S ribosomal RNA gene, complete sequence
- accession: AF138735
- length: 1501
- database: ena
- NCBI tax ID: 112248
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Seinonella peptonophila strain DSM 44666 | 112248.3 | wgs | patric | 112248 |
| 66792 | Seinonella peptonophila DSM 44666 | 2695420940 | draft | img | 112248 |
| 67770 | Seinonella peptonophila DSM 44666 | GCA_900129355 | scaffold | ncbi | 112248 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 11862 | 40 | high performance liquid chromatography (HPLC) |
| 67771 | 40.0 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 83.567 | no |
| flagellated | no | 91.455 | no |
| gram-positive | yes | 90.784 | yes |
| anaerobic | no | 97.269 | no |
| halophile | no | 86.801 | no |
| spore-forming | yes | 90.524 | no |
| thermophile | no | 73.02 | yes |
| glucose-util | yes | 88.755 | no |
| aerobic | yes | 91.709 | no |
| glucose-ferment | no | 93.356 | no |
External links
@ref: 11862
culture collection no.: DSM 44666, ATCC 27302, JCM 10113, KCTC 9740
straininfo link
- @ref: 85771
- straininfo: 63059
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11862 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44666) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44666 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 85771 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID63059.1 | StrainInfo: A central database for resolving microbial strain identifiers |