Strain identifier
BacDive ID: 16750
Type strain: 
Species: Mechercharimyces asporophorigenens
Strain history: <- A. Katsuta; MBIC 06487 <- Y. Matsuo; YM 11-542
NCBI tax ID(s): 354240 (species)
version 8.1 (current version)
General
@ref: 12208
BacDive-ID: 16750
DSM-Number: 44955
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Mechercharimyces asporophorigenens DSM 44955 is an aerobe, mesophilic bacterium that was isolated from sediment.
NCBI tax id
- NCBI tax id: 354240
- Matching level: species
strain history
- @ref: 12208
- history: <- A. Katsuta; MBIC 06487 <- Y. Matsuo; YM 11-542
doi: 10.13145/bacdive16750.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Thermoactinomycetaceae
- genus: Mechercharimyces
- species: Mechercharimyces asporophorigenens
- full scientific name: Mechercharimyces asporophorigenens Matsuo et al. 2006
@ref: 12208
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Thermoactinomycetaceae
genus: Mechercharimyces
species: Mechercharimyces asporophorigenens
full scientific name: Mechercharimyces asporophorigenens Matsuo et al. 2006
type strain: yes
Morphology
multimedia
- @ref: 12208
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44955.jpg
- caption: Medium 514 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 12208 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 12208 | TCG MEDIUM (DSMZ Medium 1009) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1009.pdf |
culture temp
- @ref: 12208
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 12208
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
- @ref: 12208
- sample type: sediment
- geographic location: Marine Lake
- country: Palau
- origin.country: PLW
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_64790.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_358;96_28147;97_35451;98_45787;99_64790&stattab=map
- Last taxonomy: Mechercharimyces
- 16S sequence: AB239532
- Sequence Identity:
- Total samples: 102
- soil counts: 15
- aquatic counts: 45
- animal counts: 39
- plant counts: 3
Safety information
risk assessment
- @ref: 12208
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 12208
- description: Mechercharimyces asporophorigenens gene for 16S rRNA, partial sequence, strain: YM11-542 (= MBIC06487)
- accession: AB239532
- length: 1439
- database: ena
- NCBI tax ID: 354240
External links
@ref: 12208
culture collection no.: DSM 44955, MBIC 06487, YM 11-542
straininfo link
- @ref: 85768
- straininfo: 281430
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17158985 | Mechercharimyces mesophilus gen. nov., sp. nov. and Mechercharimyces asporophorigenens sp. nov., antitumour substance-producing marine bacteria, and description of Thermoactinomycetaceae fam. nov. | Matsuo Y, Katsuta A, Matsuda S, Shizuri Y, Yokota A, Kasai H | Int J Syst Evol Microbiol | 10.1099/ijs.0.64223-0 | 2006 | Antineoplastic Agents/*metabolism, Bacterial Typing Techniques, DNA Gyrase/genetics, DNA, Bacterial/analysis, Genotype, Geologic Sediments/*microbiology, Gram-Positive Endospore-Forming Bacteria/*classification/genetics/isolation & purification/physiology, Japan, Marine Biology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 17456975 | Urukthapelstatin A, a novel cytotoxic substance from marine-derived Mechercharimyces asporophorigenens YM11-542. I. Fermentation, isolation and biological activities. | Matsuo Y, Kanoh K, Yamori T, Kasai H, Katsuta A, Adachi K, Shin-Ya K, Shizuri Y | J Antibiot (Tokyo) | 10.1038/ja.2007.30 | 2007 | Antibiotics, Antineoplastic/*biosynthesis/isolation & purification/pharmacology, Cell Line, Tumor, *Fermentation, Gram-Positive Endospore-Forming Bacteria/*metabolism, Humans, Leucine/*analogs & derivatives/biosynthesis/isolation & purification/pharmacology, Thiazoles/isolation & purification/pharmacology, *Water Microbiology | Enzymology |
| Metabolism | 17456976 | Urukthapelstatin A, a novel cytotoxic substance from marine-derived Mechercharimyces asporophorigenens YM11-542. II. Physico-chemical properties and structural elucidation. | Matsuo Y, Kanoh K, Imagawa H, Adachi K, Nishizawa M, Shizuri Y | J Antibiot (Tokyo) | 10.1038/ja.2007.31 | 2007 | Antibiotics, Antineoplastic/*chemistry, Crystallography, X-Ray, Gram-Positive Endospore-Forming Bacteria/*metabolism, Leucine/*analogs & derivatives/chemistry, Magnetic Resonance Spectroscopy, Thiazoles/*chemistry, *Water Microbiology | |
| Phylogeny | 25951858 | Novibacillus thermophilus gen. nov., sp. nov., a Gram-staining-negative and moderately thermophilic member of the family Thermoactinomycetaceae. | Yang G, Chen J, Zhou S | Int J Syst Evol Microbiol | 10.1099/ijs.0.000306 | 2015 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12208 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44955) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44955 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 85768 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID281430.1 | StrainInfo: A central database for resolving microbial strain identifiers |