Strain identifier

BacDive ID: 1675

Type strain: Yes

Species: Camelimonas abortus

Strain Designation: B1252, UK34/07-5, UK 34/07-5 (B1252)

Strain history: CIP <- 2011, P. Kämpfer, Justus-Liebig Univ., Giessen, Germany: strain UK 34/07-5 (B1252)

NCBI tax ID(s): 1017184 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 17748

BacDive-ID: 1675

DSM-Number: 24741

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen

description: Camelimonas abortus B1252 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from Holstein–Friesian cow, placental tissue from a case of abortion.

NCBI tax id

  • NCBI tax id: 1017184
  • Matching level: species

strain history

@refhistory
17748<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; UK34/07-5 <- H. C. Scholz, Bundeswehr Institute of Microbiology, Munich, Germany; UK34/07-5
115978CIP <- 2011, P. Kämpfer, Justus-Liebig Univ., Giessen, Germany: strain UK 34/07-5 (B1252)

doi: 10.13145/bacdive1675.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Chelatococcaceae
  • genus: Camelimonas
  • species: Camelimonas abortus
  • full scientific name: Camelimonas abortus Kämpfer et al. 2012

@ref: 17748

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Chelatococcaceae

genus: Camelimonas

species: Camelimonas abortus

full scientific name: Camelimonas abortus Kämpfer et al. 2012

strain designation: B1252, UK34/07-5, UK 34/07-5 (B1252)

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32483negative1-1.5 µm0.4-0.6 µmrod-shapedyes
30359negative2 µm1 µmrod-shapedno
115978negativeoval-shapedno

pigmentation

@refproduction
30359yes
32483yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40683MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
17748TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yesName: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/535
115978CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
17748positivegrowth28mesophilic
32483positivegrowth22-37
30359positivegrowth25-30mesophilic
32483positiveoptimum22-37
40683positivegrowth30mesophilic

culture pH

@refabilitytypepH
32483positivegrowth5.5-8
32483positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30359aerobe
32483aerobe
115978obligate aerobe

spore formation

@refspore formation
32483no
30359no

halophily

@refsaltgrowthtested relationconcentration
32483NaClpositivegrowth3 %
32483NaClpositiveoptimum3 %

observation

  • @ref: 32483
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3248322599arabinose+carbon source
3248335391aspartate+carbon source
3248317057cellobiose+carbon source
3248316947citrate+carbon source
3248323652dextrin+carbon source
3248328757fructose+carbon source
3248333984fucose+carbon source
3248328260galactose+carbon source
3248324265gluconate+carbon source
3248317234glucose+carbon source
3248329987glutamate+carbon source
3248324996lactate+carbon source
3248317306maltose+carbon source
3248337684mannose+carbon source
3248328053melibiose+carbon source
3248326271proline+carbon source
3248317272propionate+carbon source
3248315361pyruvate+carbon source
3248326546rhamnose+carbon source
3248330031succinate+carbon source
30359370543-hydroxybutyrate+carbon source
3035930089acetate+carbon source
3035917128adipate+carbon source
3035935391aspartate+carbon source
3035917234glucose+carbon source
3035917272propionate+carbon source
303599300suberic acid+carbon source
3035927082trehalose+carbon source
324834853esculin+hydrolysis
11597817632nitrate-reduction
11597816301nitrite-reduction

metabolite production

  • @ref: 115978
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
30359catalase+1.11.1.6
30359cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
115978oxidase+
115978catalase+1.11.1.6
115978urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
115978-+++-++++-++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
17748Holstein–Friesian cow, placental tissue from a case of abortionDerbyshireUnited KingdomGBREurope
115978Animal, Cow, placental tissueDerbyshireUnited KingdomGBREurope2007

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Urogenital tract
#Host Body Product#Urogenital tract#Abort

taxonmaps

  • @ref: 69479
  • File name: preview.99_162025.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_60913;97_78885;98_106595;99_162025&stattab=map
  • Last taxonomy: Camelimonas abortus subclade
  • 16S sequence: FR851926
  • Sequence Identity:
  • Total samples: 814
  • soil counts: 378
  • aquatic counts: 141
  • animal counts: 214
  • plant counts: 81

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
17748yes, in single cases1Risk group (German classification)
1159781Risk group (French classification)

Sequence information

16S sequences

  • @ref: 17748
  • description: Camelimonas abortus partial 16S rRNA gene, type strain UK34/07-5T
  • accession: FR851926
  • length: 1448
  • database: ena
  • NCBI tax ID: 1017184

GC content

  • @ref: 32483
  • GC-content: 59.4

External links

@ref: 17748

culture collection no.: DSM 24741, CCM 7941, CCUG 61094, CIP 110303

straininfo link

  • @ref: 71322
  • straininfo: 407112

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21724960Camelimonas abortus sp. nov., isolated from placental tissue of cattle.Kampfer P, Scholz HC, Lodders N, Loncaric I, Whatmore AM, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.034389-02011Animals, Bacterial Typing Techniques, Beijerinckiaceae/chemistry/*classification/genetics/*isolation & purification, Cattle, Cattle Diseases/*microbiology, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Female, Gram-Negative Bacterial Infections/microbiology/*veterinary, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Placenta/*microbiology, Polyamines/analysis, Pregnancy, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny26297575Camelimonas fluminis sp. nov., a cyhalothrin-degrading bacterium isolated from river water.Zhang L, Song M, Cao Q, Wu S, Zhao Y, Huang JW, Chen K, Li SP, Xia ZY, Jiang JDInt J Syst Evol Microbiol10.1099/ijs.0.0003842015Bacterial Typing Techniques, Base Composition, *Beijerinckiaceae/classification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nitriles, Nucleic Acid Hybridization/genetics, Phospholipids/chemistry, Phylogeny, Pyrethrins, RNA, Ribosomal, 16S/genetics, Rivers, Sequence Analysis, DNA, Spermidine/chemistry, UbiquinoneGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17748Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24741)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24741
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30359Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2669928776041
32483Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2870328776041
40683Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8148
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71322Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407112.1StrainInfo: A central database for resolving microbial strain identifiers
115978Curators of the CIPCollection of Institut Pasteur (CIP 110303)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110303