Strain identifier
BacDive ID: 1674
Type strain:
Species: Camelimonas lactis
Strain Designation: M 2040
Strain history: <- P. Kämpfer, Univ. Giessen, Germany; M 2040 <- R. Wernery
NCBI tax ID(s): 659006 (species)
General
@ref: 16636
BacDive-ID: 1674
DSM-Number: 22958
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Camelimonas lactis M 2040 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from camel milk.
NCBI tax id
- NCBI tax id: 659006
- Matching level: species
strain history
- @ref: 16636
- history: <- P. Kämpfer, Univ. Giessen, Germany; M 2040 <- R. Wernery
doi: 10.13145/bacdive1674.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Chelatococcaceae
- genus: Camelimonas
- species: Camelimonas lactis
- full scientific name: Camelimonas lactis Kämpfer et al. 2010
@ref: 16636
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Chelatococcaceae
genus: Camelimonas
species: Camelimonas lactis
full scientific name: Camelimonas lactis Kämpfer et al. 2010
strain designation: M 2040
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
29647 | negative | 2 µm | 1 µm | rod-shaped | no | |
69480 | negative | 99.98 |
colony morphology
- @ref: 61729
- incubation period: 2 days
pigmentation
- @ref: 29647
- production: yes
Culture and growth conditions
culture medium
- @ref: 16636
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16636 | positive | growth | 28 | mesophilic |
29647 | positive | growth | 15-37 | |
29647 | positive | optimum | 25-30 | mesophilic |
61729 | positive | growth | 37 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
29647 | positive | growth | 5.5-10.5 | alkaliphile |
29647 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
29647 | aerobe |
61729 | aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
29647 | no | |
69481 | no | 100 |
69480 | no | 99.99 |
observation
- @ref: 29647
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29647 | 37054 | 3-hydroxybutyrate | + | carbon source |
29647 | 30089 | acetate | + | carbon source |
29647 | 17128 | adipate | + | carbon source |
29647 | 16449 | alanine | + | carbon source |
29647 | 35391 | aspartate | + | carbon source |
29647 | 16947 | citrate | + | carbon source |
29647 | 17234 | glucose | + | carbon source |
29647 | 24996 | lactate | + | carbon source |
29647 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 29647
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date |
---|---|---|---|---|---|
16636 | camel milk | United Arab Emirates | ARE | Asia | |
61729 | Camel milk | United Arab Emirates | ARE | Asia | 2008 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | |
#Host Body Product | #Fluids | #Milk |
taxonmaps
- @ref: 69479
- File name: preview.99_53913.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_24099;97_30150;98_38561;99_53913&stattab=map
- Last taxonomy: Camelimonas
- 16S sequence: FN430422
- Sequence Identity:
- Total samples: 792
- soil counts: 340
- aquatic counts: 165
- animal counts: 270
- plant counts: 17
Safety information
risk assessment
- @ref: 16636
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16636
- description: Alpha proteobacterium M 2040 partial 16S rRNA gene, strain M 2040T
- accession: FN430422
- length: 1435
- database: ena
- NCBI tax ID: 659006
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Camelimonas lactis DSM 22958 | GCA_004342915 | contig | ncbi | 659006 |
66792 | Camelimonas lactis strain DSM 22958 | 659006.3 | wgs | patric | 659006 |
66792 | Camelimonas lactis DSM 22958 | 2799112273 | draft | img | 659006 |
GC content
- @ref: 16636
- GC-content: 65
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 98.32 | yes |
anaerobic | no | 97.56 | yes |
halophile | no | 91.034 | no |
spore-forming | no | 95.327 | yes |
glucose-util | yes | 68.492 | no |
thermophile | no | 94.537 | yes |
flagellated | no | 94.775 | yes |
motile | no | 87.23 | yes |
aerobic | yes | 85.897 | yes |
glucose-ferment | no | 90.489 | no |
External links
@ref: 16636
culture collection no.: DSM 22958, CCM 7696, CCUG 58638
straininfo link
- @ref: 71321
- straininfo: 363914
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19933583 | Camelimonas lactis gen. nov., sp. nov., isolated from the milk of camels. | Kampfer P, Scholz HC, Langer S, Wernery U, Wernery R, Johnson B, Joseph M, Lodders N, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.017806-0 | 2009 | Animals, Bacterial Typing Techniques, Beijerinckiaceae/chemistry/*classification/genetics/*isolation & purification, Camelus/*microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Milk/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, United Arab Emirates | Genetics |
Phylogeny | 21724960 | Camelimonas abortus sp. nov., isolated from placental tissue of cattle. | Kampfer P, Scholz HC, Lodders N, Loncaric I, Whatmore AM, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.034389-0 | 2011 | Animals, Bacterial Typing Techniques, Beijerinckiaceae/chemistry/*classification/genetics/*isolation & purification, Cattle, Cattle Diseases/*microbiology, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Female, Gram-Negative Bacterial Infections/microbiology/*veterinary, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Placenta/*microbiology, Polyamines/analysis, Pregnancy, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 26297575 | Camelimonas fluminis sp. nov., a cyhalothrin-degrading bacterium isolated from river water. | Zhang L, Song M, Cao Q, Wu S, Zhao Y, Huang JW, Chen K, Li SP, Xia ZY, Jiang JD | Int J Syst Evol Microbiol | 10.1099/ijs.0.000384 | 2015 | Bacterial Typing Techniques, Base Composition, *Beijerinckiaceae/classification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nitriles, Nucleic Acid Hybridization/genetics, Phospholipids/chemistry, Phylogeny, Pyrethrins, RNA, Ribosomal, 16S/genetics, Rivers, Sequence Analysis, DNA, Spermidine/chemistry, Ubiquinone | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
16636 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22958) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22958 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
29647 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26036 | 28776041 | ||
61729 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 58638) | https://www.ccug.se/strain?id=58638 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
71321 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID363914.1 | StrainInfo: A central database for resolving microbial strain identifiers |