Strain identifier

BacDive ID: 1674

Type strain: Yes

Species: Camelimonas lactis

Strain Designation: M 2040

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; M 2040 <- R. Wernery

NCBI tax ID(s): 659006 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16636

BacDive-ID: 1674

DSM-Number: 22958

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Camelimonas lactis M 2040 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from camel milk.

NCBI tax id

  • NCBI tax id: 659006
  • Matching level: species

strain history

  • @ref: 16636
  • history: <- P. Kämpfer, Univ. Giessen, Germany; M 2040 <- R. Wernery

doi: 10.13145/bacdive1674.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Chelatococcaceae
  • genus: Camelimonas
  • species: Camelimonas lactis
  • full scientific name: Camelimonas lactis Kämpfer et al. 2010

@ref: 16636

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Chelatococcaceae

genus: Camelimonas

species: Camelimonas lactis

full scientific name: Camelimonas lactis Kämpfer et al. 2010

strain designation: M 2040

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29647negative2 µm1 µmrod-shapedno
69480negative99.98

colony morphology

  • @ref: 61729
  • incubation period: 2 days

pigmentation

  • @ref: 29647
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16636
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16636positivegrowth28mesophilic
29647positivegrowth15-37
29647positiveoptimum25-30mesophilic
61729positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
29647positivegrowth5.5-10.5alkaliphile
29647positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29647aerobe
61729aerobe

spore formation

@refspore formationconfidence
29647no
69481no100
69480no99.99

observation

  • @ref: 29647
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29647370543-hydroxybutyrate+carbon source
2964730089acetate+carbon source
2964717128adipate+carbon source
2964716449alanine+carbon source
2964735391aspartate+carbon source
2964716947citrate+carbon source
2964717234glucose+carbon source
2964724996lactate+carbon source
296474853esculin+hydrolysis

enzymes

  • @ref: 29647
  • value: cytochrome oxidase
  • activity: +
  • ec: 1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
16636camel milkUnited Arab EmiratesAREAsia
61729Camel milkUnited Arab EmiratesAREAsia2008

isolation source categories

Cat1Cat2Cat3
#Host#Mammals
#Host Body Product#Fluids#Milk

taxonmaps

  • @ref: 69479
  • File name: preview.99_53913.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_24099;97_30150;98_38561;99_53913&stattab=map
  • Last taxonomy: Camelimonas
  • 16S sequence: FN430422
  • Sequence Identity:
  • Total samples: 792
  • soil counts: 340
  • aquatic counts: 165
  • animal counts: 270
  • plant counts: 17

Safety information

risk assessment

  • @ref: 16636
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16636
  • description: Alpha proteobacterium M 2040 partial 16S rRNA gene, strain M 2040T
  • accession: FN430422
  • length: 1435
  • database: ena
  • NCBI tax ID: 659006

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Camelimonas lactis DSM 22958GCA_004342915contigncbi659006
66792Camelimonas lactis strain DSM 22958659006.3wgspatric659006
66792Camelimonas lactis DSM 229582799112273draftimg659006

GC content

  • @ref: 16636
  • GC-content: 65

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.32yes
anaerobicno97.56yes
halophileno91.034no
spore-formingno95.327yes
glucose-utilyes68.492no
thermophileno94.537yes
flagellatedno94.775yes
motileno87.23yes
aerobicyes85.897yes
glucose-fermentno90.489no

External links

@ref: 16636

culture collection no.: DSM 22958, CCM 7696, CCUG 58638

straininfo link

  • @ref: 71321
  • straininfo: 363914

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19933583Camelimonas lactis gen. nov., sp. nov., isolated from the milk of camels.Kampfer P, Scholz HC, Langer S, Wernery U, Wernery R, Johnson B, Joseph M, Lodders N, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.017806-02009Animals, Bacterial Typing Techniques, Beijerinckiaceae/chemistry/*classification/genetics/*isolation & purification, Camelus/*microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Milk/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, United Arab EmiratesGenetics
Phylogeny21724960Camelimonas abortus sp. nov., isolated from placental tissue of cattle.Kampfer P, Scholz HC, Lodders N, Loncaric I, Whatmore AM, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.034389-02011Animals, Bacterial Typing Techniques, Beijerinckiaceae/chemistry/*classification/genetics/*isolation & purification, Cattle, Cattle Diseases/*microbiology, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Female, Gram-Negative Bacterial Infections/microbiology/*veterinary, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Placenta/*microbiology, Polyamines/analysis, Pregnancy, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny26297575Camelimonas fluminis sp. nov., a cyhalothrin-degrading bacterium isolated from river water.Zhang L, Song M, Cao Q, Wu S, Zhao Y, Huang JW, Chen K, Li SP, Xia ZY, Jiang JDInt J Syst Evol Microbiol10.1099/ijs.0.0003842015Bacterial Typing Techniques, Base Composition, *Beijerinckiaceae/classification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nitriles, Nucleic Acid Hybridization/genetics, Phospholipids/chemistry, Phylogeny, Pyrethrins, RNA, Ribosomal, 16S/genetics, Rivers, Sequence Analysis, DNA, Spermidine/chemistry, UbiquinoneGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16636Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22958)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22958
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29647Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2603628776041
61729Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 58638)https://www.ccug.se/strain?id=58638
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71321Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID363914.1StrainInfo: A central database for resolving microbial strain identifiers