Strain identifier

BacDive ID: 16728

Type strain: No

Species: Thermus igniterrae

Strain Designation: HN1-8

Strain history: <- M. S. da Costa, Univ. Coimbra; HN1-8

NCBI tax ID(s): 88189 (species)

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General

@ref: 4728

BacDive-ID: 16728

DSM-Number: 12460

keywords: 16S sequence, Bacteria

description: Thermus igniterrae HN1-8 is a bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 88189
  • Matching level: species

strain history

  • @ref: 4728
  • history: <- M. S. da Costa, Univ. Coimbra; HN1-8

doi: 10.13145/bacdive16728.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/deinococcota
  • domain: Bacteria
  • phylum: Deinococcota
  • class: Deinococci
  • order: Thermales
  • family: Thermaceae
  • genus: Thermus
  • species: Thermus igniterrae
  • full scientific name: Thermus igniterrae Chung et al. 2000

@ref: 4728

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Thermales

family: Thermaceae

genus: Thermus

species: Thermus igniterrae

full scientific name: Thermus igniterrae Chung et al. 2000

strain designation: HN1-8

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4728MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630)yeshttps://mediadive.dsmz.de/medium/630Name: MODIFIED THERMUS 162 MEDIUM (DSMZ Medium 630) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 2.5 g/l Tryptone 2.5 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l CaSO4 x 2 H2O 0.04 g/l Nitrilotriacetic acid 0.0064 g/l Fe(III) citrate 0.00122472 g/l FeCl2 x 4 H2O 0.0005 g/l MnCl2 x 4 H2O 0.00025 g/l CoCl2 x 4 H2O 0.00015 g/l CuCl2 x 2 H2O 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l H3BO3 1e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Distilled water
4728THERMUS 162 MEDIUM (DSMZ Medium 878)yeshttps://mediadive.dsmz.de/medium/878Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water

culture temp

  • @ref: 4728
  • growth: positive
  • type: growth
  • temperature: 70

Isolation, sampling and environmental information

isolation

  • @ref: 4728
  • sample type: hot spring
  • geographic location: Hruni
  • country: Iceland
  • origin.country: ISL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_104988.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_87;96_2025;97_25470;98_32294;99_104988&stattab=map
  • Last taxonomy: Thermus igniterrae subclade
  • 16S sequence: Y18407
  • Sequence Identity:
  • Total samples: 2017
  • soil counts: 141
  • aquatic counts: 678
  • animal counts: 1084
  • plant counts: 114

Safety information

risk assessment

  • @ref: 4728
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4728
  • description: Thermus igniterrae 16S rRNA gene, strain HN1-8
  • accession: Y18407
  • length: 1472
  • database: nuccore
  • NCBI tax ID: 88189

External links

@ref: 4728

culture collection no.: DSM 12460

straininfo link

  • @ref: 85747
  • straininfo: 49292

literature

  • topic: Phylogeny
  • Pubmed-ID: 10826806
  • title: Thermus igniterrae sp. nov. and Thermus antranikianii sp. nov., two new species from Iceland.
  • authors: Chung AP, Rainey FA, Valente M, Nobre MF, da Costa MS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-50-1-209
  • year: 2000
  • mesh: Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Iceland, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Temperature, Thermus/chemistry/*classification/genetics/growth & development/isolation & purification, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
4728Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12460)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12460
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85747Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49292.1StrainInfo: A central database for resolving microbial strain identifiers