Strain identifier

BacDive ID: 16723

Type strain: Yes

Species: Thermus filiformis

Strain Designation: Wai 33 A1

Culture col. no.: DSM 4687, ATCC 43280, JCM 11600, BCRC 17263, CCM 4200, NCIMB 12588

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General

@ref: 1682

BacDive-ID: 16723

DSM-Number: 4687

keywords: thermophilic, Bacteria, 16S sequence, genome sequence

description: Thermus filiformis Wai 33 A1 is a thermophilic bacterium that was isolated from hot spring.

strain history

doi: 10.13145/bacdive16723.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/deinococcus-thermus
  • domain: Bacteria
  • phylum: Deinococcus-Thermus
  • class: Deinococci
  • order: Thermales
  • family: Thermaceae
  • genus: Thermus
  • species: Thermus filiformis
  • full scientific name: Thermus filiformis Hudson et al. 1987

@ref: 1682

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Thermales

family: Thermaceae

genus: Thermus

species: Thermus filiformis

full scientific name: Thermus filiformis Hudson et al. 1987

strain designation: Wai 33 A1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1682
  • name: THERMUS 162 MEDIUM (DSMZ Medium 878)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/878
  • composition: Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l H2SO4 Distilled water

culture temp

@refgrowthtypetemperaturerange
1682positivegrowth70thermophilic
67770positivegrowth60thermophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1682hot springNew ZealandNZLAustralia and Oceania
67770Hot spring in the Waimangu thermal valleyNew ZealandNZLAustralia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 1682
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218T.filiformis 16S ribosomal RNA, partX583451144ena276
20218Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 1FR7499501512ena276
20218Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 2FR7499511513ena276
20218Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 3FR7499521514ena276

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thermus filiformis ATCC 43280GCA_000771745contigncbi276
66792Thermus filiformis ATCC 43280276.5wgspatric276
66792Thermus filiformis ATCC 432802639763100draftimg276
67770Thermus filiformis strain ATCC 43280, whole genome shotgun sequencing projectJPSL00000000nuccore276

GC content

  • @ref: 67770
  • GC-content: 65
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 1682

culture collection no.: DSM 4687, ATCC 43280, JCM 11600, BCRC 17263, CCM 4200, NCIMB 12588

straininfo link

@refpassport
20218http://www.straininfo.net/strains/158927
20218http://www.straininfo.net/strains/112406

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1682Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4687)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4687
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/