Strain identifier

BacDive ID: 1672

Type strain: Yes

Species: Beijerinckia doebereinerae

Strain Designation: BF-2819, Hilger

Strain history: <- M. Oggerin de Orube, Centro de Ciencias Medioambientales, CSIC, Madrid, Spain; BF-2819 <- ? <- LMG; LMG 2819 <- F. Hilger (exact strain not specified by LMG)

NCBI tax ID(s): 1403274 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8225

BacDive-ID: 1672

DSM-Number: 19635

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Beijerinckia doebereinerae BF-2819 is a mesophilic, Gram-negative, rod-shaped bacterium that forms irregular colonies.

NCBI tax id

  • NCBI tax id: 1403274
  • Matching level: species

strain history

  • @ref: 8225
  • history: <- M. Oggerin de Orube, Centro de Ciencias Medioambientales, CSIC, Madrid, Spain; BF-2819 <- ? <- LMG; LMG 2819 <- F. Hilger (exact strain not specified by LMG)

doi: 10.13145/bacdive1672.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Beijerinckiaceae
  • genus: Beijerinckia
  • species: Beijerinckia doebereinerae
  • full scientific name: Beijerinckia doebereinerae Oggerin et al. 2009

@ref: 8225

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Beijerinckiaceae

genus: Beijerinckia

species: Beijerinckia doebereinerae

full scientific name: Beijerinckia doebereinerae Oggerin et al. 2009

strain designation: BF-2819, Hilger

type strain: yes

Morphology

cell morphology

  • @ref: 23151
  • gram stain: negative
  • cell length: 3.25 µm
  • cell width: 1.0 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 23151
  • colony color: cream
  • colony shape: irregular
  • incubation period: 5 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8225BEIJERINCKIA DOEBEREINERAE MEDIUM (DSMZ Medium 1215)yeshttps://mediadive.dsmz.de/medium/1215Name: BEIJERINCKIA DOEBEREINERAE MEDIUM (DSMZ Medium 1215) Composition: Glucose 20.0 g/l Agar 15.0 g/l KH2PO4 0.8 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.2 g/l FeCl3 x 6 H2O 0.1 g/l CaCl2 x 2 H2O 0.05 g/l Na2MoO4 x 7 H2O 0.005 g/l Distilled water
8225Beijerinckia Medium (LMG 18) (DSMZ Medium 1736)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1736.pdf

culture temp

@refgrowthtypetemperaturerange
8225positivegrowth28mesophilic
23151positivegrowth10-35
23151nogrowth37mesophilic
23151positiveoptimum30mesophilic
8225positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
23151positivegrowth3-10alkaliphile
23151positiveoptimum6.5

Physiology and metabolism

spore formation

  • @ref: 23151
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2315117234glucose-builds acid from
23151168082-dehydro-D-gluconate-carbon source
23151174265-dehydro-D-gluconate-carbon source
2315127613amygdalin-carbon source
2315118305arbutin-carbon source
2315117057cellobiose-carbon source
2315115963ribitol-carbon source
2315117108D-arabinose-carbon source
2315118333D-arabitol-carbon source
2315116899D-mannitol-carbon source
2315116988D-ribose-carbon source
2315117924D-sorbitol-carbon source
2315116443D-tagatose-carbon source
2315165327D-xylose-carbon source
2315116813galactitol-carbon source
2315117113erythritol-carbon source
231514853esculin-carbon source
2315128066gentiobiose-carbon source
2315117754glycerol-carbon source
2315128087glycogen-carbon source
2315117268myo-inositol-carbon source
2315115443inulin-carbon source
2315118403L-arabitol-carbon source
2315118287L-fucose-carbon source
2315162345L-rhamnose-carbon source
2315117266L-sorbose-carbon source
2315117716lactose-carbon source
231516731melezitose-carbon source
2315128053melibiose-carbon source
2315143943methyl alpha-D-mannoside-carbon source
2315174863methyl beta-D-xylopyranoside-carbon source
23151506227N-acetylglucosamine-carbon source
2315132032potassium gluconate-carbon source
2315116634raffinose-carbon source
2315117814salicin-carbon source
2315128017starch-carbon source
2315127082trehalose-carbon source
2315117151xylitol-carbon source
2315127897tryptophan-energy source
2315117128adipate-growth
2315127689decanoate-growth
2315116947citrate-growth
2315117634D-glucose-growth
2315116899D-mannitol-growth
2315116024D-mannose-growth
2315124265gluconate-growth
2315130849L-arabinose-growth
2315125115malate-growth
2315117306maltose-growth
23151506227N-acetylglucosamine-growth
2315118401phenylacetate-growth
231514853esculin-hydrolysis
231515291gelatin-hydrolysis
2315115824D-fructose+carbon source
2315128847D-fucose+carbon source
2315112936D-galactose+carbon source
2315117634D-glucose+carbon source
2315162318D-lyxose+carbon source
2315116024D-mannose+carbon source
2315130849L-arabinose+carbon source
2315165328L-xylose+carbon source
2315117306maltose+carbon source
23151320061methyl alpha-D-glucopyranoside+carbon source
2315117992sucrose+carbon source
2315132528turanose+carbon source
2315127897tryptophan+energy source
2315117632nitrate+reduction

metabolite production

  • @ref: 23151
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 23151
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
23151acid phosphatase+3.1.3.2
23151alkaline phosphatase+3.1.3.1
23151alpha-chymotrypsin-3.4.21.1
23151alpha-fucosidase-3.2.1.51
23151alpha-galactosidase-3.2.1.22
23151alpha-glucosidase+3.2.1.20
23151alpha-mannosidase-3.2.1.24
23151arginine dihydrolase-3.5.3.6
23151beta-galactosidase-3.2.1.23
23151beta-glucosidase-3.2.1.21
23151beta-glucuronidase-3.2.1.31
23151catalase+1.11.1.6
23151cystine arylamidase+3.4.11.3
23151cytochrome oxidase+1.9.3.1
23151esterase (C 4)+
23151esterase lipase (C 8)+
23151leucine arylamidase+3.4.11.1
23151lipase (C 14)+
23151N-acetyl-beta-glucosaminidase-3.2.1.52
23151naphthol-AS-BI-phosphohydrolase+
23151trypsin+3.4.21.4
23151tryptophan deaminase+4.1.99.1
23151tryptophan deaminase-4.1.99.1
23151urease-3.5.1.5
23151valine arylamidase+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_36316.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_17367;97_21357;98_26786;99_36316&stattab=map
  • Last taxonomy: Beijerinckia doebereinerae subclade
  • 16S sequence: EU401905
  • Sequence Identity:
  • Total samples: 28
  • soil counts: 23
  • aquatic counts: 1
  • animal counts: 1
  • plant counts: 3

Safety information

risk assessment

  • @ref: 8225
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8225
  • description: Beijerinckia doebereinerae strain LMG 2819 16S ribosomal RNA gene, partial sequence
  • accession: EU401905
  • length: 1453
  • database: ena
  • NCBI tax ID: 1403274

GC content

  • @ref: 8225
  • GC-content: 57.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 8225

culture collection no.: DSM 19635, CECT 7311, LMG 2819

straininfo link

  • @ref: 71319
  • straininfo: 1221

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19620377Identification of Beijerinckia fluminensis strains CIP 106281T and UQM 1685T as Rhizobium radiobacter strains, and proposal of Beijerinckia doebereinerae sp. nov. to accommodate Beijerinckia fluminensis LMG 2819.Oggerin M, Arahal DR, Rubio V, Marin IInt J Syst Evol Microbiol10.1099/ijs.0.006593-02009Agrobacterium tumefaciens/*classification/*genetics/ultrastructure, Beijerinckiaceae/*classification/*genetics/ultrastructure, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, United StatesGenetics
Phylogeny31741189Lichenibacterium ramalinae gen. nov, sp. nov., Lichenibacterium minor sp. nov., the first endophytic, beta-carotene producing bacterial representatives from lichen thalli and the proposal of the new family Lichenibacteriaceae within the order Rhizobiales.Pankratov TA, Grouzdev DS, Patutina EO, Kolganova TV, Suzina NE, Berestovskaya JJAntonie Van Leeuwenhoek10.1007/s10482-019-01357-62019Alphaproteobacteria/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Genome, Bacterial, Lichens/*microbiology, Phylogeny, Polymerase Chain Reaction, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, beta Carotene/*biosynthesisGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8225Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19635)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19635
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23151Monike Oggerin, David R. Arahal, Víctor Rubio, Irma Mar10.1099/ijs.0.006593-0Identification of Beijerinckia fluminensis strains CIP 106281T and UQM 1685T as Rhizobium radiobacter strains, and proposal of Beijerinckia doebereinerae sp. nov. to accommodate Beijerinckia fluminensis LMG 2819IJSEM 59: 2323-2328 200919620377
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71319Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1221.1StrainInfo: A central database for resolving microbial strain identifiers