Strain identifier
BacDive ID: 1672
Type strain:
Species: Beijerinckia doebereinerae
Strain Designation: BF-2819, Hilger
Strain history: <- M. Oggerin de Orube, Centro de Ciencias Medioambientales, CSIC, Madrid, Spain; BF-2819 <- ? <- LMG; LMG 2819 <- F. Hilger (exact strain not specified by LMG)
NCBI tax ID(s): 1403274 (species)
General
@ref: 8225
BacDive-ID: 1672
DSM-Number: 19635
keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped, colony-forming
description: Beijerinckia doebereinerae BF-2819 is a mesophilic, Gram-negative, rod-shaped bacterium that forms irregular colonies.
NCBI tax id
- NCBI tax id: 1403274
- Matching level: species
strain history
- @ref: 8225
- history: <- M. Oggerin de Orube, Centro de Ciencias Medioambientales, CSIC, Madrid, Spain; BF-2819 <- ? <- LMG; LMG 2819 <- F. Hilger (exact strain not specified by LMG)
doi: 10.13145/bacdive1672.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Beijerinckiaceae
- genus: Beijerinckia
- species: Beijerinckia doebereinerae
- full scientific name: Beijerinckia doebereinerae Oggerin et al. 2009
@ref: 8225
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Beijerinckiaceae
genus: Beijerinckia
species: Beijerinckia doebereinerae
full scientific name: Beijerinckia doebereinerae Oggerin et al. 2009
strain designation: BF-2819, Hilger
type strain: yes
Morphology
cell morphology
- @ref: 23151
- gram stain: negative
- cell length: 3.25 µm
- cell width: 1.0 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 23151
- colony color: cream
- colony shape: irregular
- incubation period: 5 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8225 | BEIJERINCKIA DOEBEREINERAE MEDIUM (DSMZ Medium 1215) | yes | https://mediadive.dsmz.de/medium/1215 | Name: BEIJERINCKIA DOEBEREINERAE MEDIUM (DSMZ Medium 1215) Composition: Glucose 20.0 g/l Agar 15.0 g/l KH2PO4 0.8 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.2 g/l FeCl3 x 6 H2O 0.1 g/l CaCl2 x 2 H2O 0.05 g/l Na2MoO4 x 7 H2O 0.005 g/l Distilled water |
8225 | Beijerinckia Medium (LMG 18) (DSMZ Medium 1736) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1736.pdf |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8225 | positive | growth | 28 | mesophilic |
23151 | positive | growth | 10-35 | |
23151 | no | growth | 37 | mesophilic |
23151 | positive | optimum | 30 | mesophilic |
8225 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
23151 | positive | growth | 3-10 | alkaliphile |
23151 | positive | optimum | 6.5 |
Physiology and metabolism
spore formation
- @ref: 23151
- spore formation: no
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23151 | 17234 | glucose | - | builds acid from |
23151 | 16808 | 2-dehydro-D-gluconate | - | carbon source |
23151 | 17426 | 5-dehydro-D-gluconate | - | carbon source |
23151 | 27613 | amygdalin | - | carbon source |
23151 | 18305 | arbutin | - | carbon source |
23151 | 17057 | cellobiose | - | carbon source |
23151 | 15963 | ribitol | - | carbon source |
23151 | 17108 | D-arabinose | - | carbon source |
23151 | 18333 | D-arabitol | - | carbon source |
23151 | 16899 | D-mannitol | - | carbon source |
23151 | 16988 | D-ribose | - | carbon source |
23151 | 17924 | D-sorbitol | - | carbon source |
23151 | 16443 | D-tagatose | - | carbon source |
23151 | 65327 | D-xylose | - | carbon source |
23151 | 16813 | galactitol | - | carbon source |
23151 | 17113 | erythritol | - | carbon source |
23151 | 4853 | esculin | - | carbon source |
23151 | 28066 | gentiobiose | - | carbon source |
23151 | 17754 | glycerol | - | carbon source |
23151 | 28087 | glycogen | - | carbon source |
23151 | 17268 | myo-inositol | - | carbon source |
23151 | 15443 | inulin | - | carbon source |
23151 | 18403 | L-arabitol | - | carbon source |
23151 | 18287 | L-fucose | - | carbon source |
23151 | 62345 | L-rhamnose | - | carbon source |
23151 | 17266 | L-sorbose | - | carbon source |
23151 | 17716 | lactose | - | carbon source |
23151 | 6731 | melezitose | - | carbon source |
23151 | 28053 | melibiose | - | carbon source |
23151 | 43943 | methyl alpha-D-mannoside | - | carbon source |
23151 | 74863 | methyl beta-D-xylopyranoside | - | carbon source |
23151 | 506227 | N-acetylglucosamine | - | carbon source |
23151 | 32032 | potassium gluconate | - | carbon source |
23151 | 16634 | raffinose | - | carbon source |
23151 | 17814 | salicin | - | carbon source |
23151 | 28017 | starch | - | carbon source |
23151 | 27082 | trehalose | - | carbon source |
23151 | 17151 | xylitol | - | carbon source |
23151 | 27897 | tryptophan | - | energy source |
23151 | 17128 | adipate | - | growth |
23151 | 27689 | decanoate | - | growth |
23151 | 16947 | citrate | - | growth |
23151 | 17634 | D-glucose | - | growth |
23151 | 16899 | D-mannitol | - | growth |
23151 | 16024 | D-mannose | - | growth |
23151 | 24265 | gluconate | - | growth |
23151 | 30849 | L-arabinose | - | growth |
23151 | 25115 | malate | - | growth |
23151 | 17306 | maltose | - | growth |
23151 | 506227 | N-acetylglucosamine | - | growth |
23151 | 18401 | phenylacetate | - | growth |
23151 | 4853 | esculin | - | hydrolysis |
23151 | 5291 | gelatin | - | hydrolysis |
23151 | 15824 | D-fructose | + | carbon source |
23151 | 28847 | D-fucose | + | carbon source |
23151 | 12936 | D-galactose | + | carbon source |
23151 | 17634 | D-glucose | + | carbon source |
23151 | 62318 | D-lyxose | + | carbon source |
23151 | 16024 | D-mannose | + | carbon source |
23151 | 30849 | L-arabinose | + | carbon source |
23151 | 65328 | L-xylose | + | carbon source |
23151 | 17306 | maltose | + | carbon source |
23151 | 320061 | methyl alpha-D-glucopyranoside | + | carbon source |
23151 | 17992 | sucrose | + | carbon source |
23151 | 32528 | turanose | + | carbon source |
23151 | 27897 | tryptophan | + | energy source |
23151 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 23151
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 23151
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
23151 | acid phosphatase | + | 3.1.3.2 |
23151 | alkaline phosphatase | + | 3.1.3.1 |
23151 | alpha-chymotrypsin | - | 3.4.21.1 |
23151 | alpha-fucosidase | - | 3.2.1.51 |
23151 | alpha-galactosidase | - | 3.2.1.22 |
23151 | alpha-glucosidase | + | 3.2.1.20 |
23151 | alpha-mannosidase | - | 3.2.1.24 |
23151 | arginine dihydrolase | - | 3.5.3.6 |
23151 | beta-galactosidase | - | 3.2.1.23 |
23151 | beta-glucosidase | - | 3.2.1.21 |
23151 | beta-glucuronidase | - | 3.2.1.31 |
23151 | catalase | + | 1.11.1.6 |
23151 | cystine arylamidase | + | 3.4.11.3 |
23151 | cytochrome oxidase | + | 1.9.3.1 |
23151 | esterase (C 4) | + | |
23151 | esterase lipase (C 8) | + | |
23151 | leucine arylamidase | + | 3.4.11.1 |
23151 | lipase (C 14) | + | |
23151 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
23151 | naphthol-AS-BI-phosphohydrolase | + | |
23151 | trypsin | + | 3.4.21.4 |
23151 | tryptophan deaminase | + | 4.1.99.1 |
23151 | tryptophan deaminase | - | 4.1.99.1 |
23151 | urease | - | 3.5.1.5 |
23151 | valine arylamidase | + |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_36316.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_17367;97_21357;98_26786;99_36316&stattab=map
- Last taxonomy: Beijerinckia doebereinerae subclade
- 16S sequence: EU401905
- Sequence Identity:
- Total samples: 28
- soil counts: 23
- aquatic counts: 1
- animal counts: 1
- plant counts: 3
Safety information
risk assessment
- @ref: 8225
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8225
- description: Beijerinckia doebereinerae strain LMG 2819 16S ribosomal RNA gene, partial sequence
- accession: EU401905
- length: 1453
- database: ena
- NCBI tax ID: 1403274
GC content
- @ref: 8225
- GC-content: 57.1
- method: high performance liquid chromatography (HPLC)
External links
@ref: 8225
culture collection no.: DSM 19635, CECT 7311, LMG 2819
straininfo link
- @ref: 71319
- straininfo: 1221
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19620377 | Identification of Beijerinckia fluminensis strains CIP 106281T and UQM 1685T as Rhizobium radiobacter strains, and proposal of Beijerinckia doebereinerae sp. nov. to accommodate Beijerinckia fluminensis LMG 2819. | Oggerin M, Arahal DR, Rubio V, Marin I | Int J Syst Evol Microbiol | 10.1099/ijs.0.006593-0 | 2009 | Agrobacterium tumefaciens/*classification/*genetics/ultrastructure, Beijerinckiaceae/*classification/*genetics/ultrastructure, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, United States | Genetics |
Phylogeny | 31741189 | Lichenibacterium ramalinae gen. nov, sp. nov., Lichenibacterium minor sp. nov., the first endophytic, beta-carotene producing bacterial representatives from lichen thalli and the proposal of the new family Lichenibacteriaceae within the order Rhizobiales. | Pankratov TA, Grouzdev DS, Patutina EO, Kolganova TV, Suzina NE, Berestovskaya JJ | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01357-6 | 2019 | Alphaproteobacteria/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Genome, Bacterial, Lichens/*microbiology, Phylogeny, Polymerase Chain Reaction, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, beta Carotene/*biosynthesis | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8225 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19635) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19635 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23151 | Monike Oggerin, David R. Arahal, Víctor Rubio, Irma Mar | 10.1099/ijs.0.006593-0 | Identification of Beijerinckia fluminensis strains CIP 106281T and UQM 1685T as Rhizobium radiobacter strains, and proposal of Beijerinckia doebereinerae sp. nov. to accommodate Beijerinckia fluminensis LMG 2819 | IJSEM 59: 2323-2328 2009 | 19620377 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
71319 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1221.1 | StrainInfo: A central database for resolving microbial strain identifiers |