Strain identifier
BacDive ID: 167144
Type strain: 
Species: Acinetobacter stercoris
Strain Designation: KPC-SM-21
Strain history: CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain KPC-SM-21
NCBI tax ID(s): 2126983 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 167144
DSM-Number: 102168
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped
description: Acinetobacter stercoris KPC-SM-21 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from Environment, Digestate of a storage tank of a mesophilic German biogas plant.
NCBI tax id
- NCBI tax id: 2126983
- Matching level: species
strain history
| @ref | history |
|---|---|
| 68758 | <- S. Glaeser, Institut für Angewandte Mikrobiologie, Universität Giessen; KPC-SM-21 <- S. Mishra; |
| 123312 | CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain KPC-SM-21 |
doi: 10.13145/bacdive167144.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter stercoris
- full scientific name: Acinetobacter stercoris Pulami et al. 2021
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter stercoris
full scientific name: Acinetobacter stercoris Pulami et al. 2021
strain designation: KPC-SM-21
type strain: yes
Morphology
cell morphology
- @ref: 123312
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 68758 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf |
| 123312 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 68758
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 123312
- sample type: Environment, Digestate of a storage tank of a mesophilic German biogas plant
- geographic location: Giessen, Hessen
- country: Germany
- origin.country: DEU
- continent: Europe
taxonmaps
- @ref: 69479
- File name: preview.99_173986.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_84022;98_113916;99_173986&stattab=map
- Last taxonomy: Acinetobacter
- 16S sequence: MT138756
- Sequence Identity:
- Total samples: 232
- soil counts: 57
- aquatic counts: 52
- animal counts: 118
- plant counts: 5
Safety information
risk assessment
- @ref: 123312
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 20215
- description: Acinetobacter stercoris strain KPC-SM-21 16S ribosomal RNA gene, partial sequence
- accession: MT138756
- length: 1439
- database: ena
- NCBI tax ID: 2126983
Genome sequences
- @ref: 66792
- description: Acinetobacter stercoris KPC-SM-21
- accession: GCA_900323515
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2126983
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 95.455 | no |
| gram-positive | no | 97.383 | no |
| anaerobic | no | 98.628 | no |
| aerobic | yes | 92.573 | no |
| halophile | no | 90.741 | no |
| spore-forming | no | 96.511 | no |
| thermophile | no | 99.762 | yes |
| glucose-util | no | 77.654 | no |
| motile | no | 91.334 | no |
| glucose-ferment | no | 87.552 | no |
External links
@ref: 20215
culture collection no.: DSM 102168, LMG 29413, CIP 111016
straininfo link
- @ref: 114901
- straininfo: 399214
literature
- topic: Phylogeny
- Pubmed-ID: 33591460
- title: Acinetobacter stercoris sp. nov. isolated from output source of a mesophilic german biogas plant with anaerobic operating conditions.
- authors: Pulami D, Schauss T, Eisenberg T, Blom J, Schwengers O, Bender JK, Wilharm G, Kampfer P, Glaeser SP
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-021-01517-7
- year: 2021
- mesh: *Acinetobacter/genetics, Anaerobiosis, Bacterial Typing Techniques, Base Composition, *Biofuels, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68758 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102168 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102168) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 114901 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399214.1 | |
| 123312 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111016 | Collection of Institut Pasteur (CIP 111016) |