Strain identifier
BacDive ID: 167132
Type strain: 
Species: Pseudomonas lalkuanensis
Strain Designation: PE08
NCBI tax ID(s): 2604832 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 167132
keywords: genome sequence, 16S sequence, Bacteria
description: Pseudomonas lalkuanensis PE08 is a bacterium of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 2604832
- Matching level: species
doi: 10.13145/bacdive167132.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas lalkuanensis
- full scientific name: Pseudomonas lalkuanensis Thorat et al. 2020
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas lalkuanensis
full scientific name: Pseudomonas lalkuanensis Thorat et al. 2020
strain designation: PE08
type strain: yes
Sequence information
16S sequences
- @ref: 20215
- description: Pseudomonas lalkuanensis strain PE08 chromosome, complete genome
- accession: CP043311
- length: 6056953
- database: ena
- NCBI tax ID: 2604832
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas lalkuanensis PE08 | GCA_008807375 | complete | ncbi | 2604832 |
| 66792 | Pseudomonas sp. PE08 | 2604832.3 | complete | patric | 2604832 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 91.154 | no |
| flagellated | yes | 86.834 | no |
| gram-positive | no | 98.465 | no |
| anaerobic | no | 98.54 | no |
| aerobic | yes | 94.215 | no |
| halophile | no | 82.223 | no |
| spore-forming | no | 95.272 | no |
| thermophile | no | 99.726 | no |
| glucose-util | yes | 88.026 | no |
| glucose-ferment | no | 89.916 | no |
External links
@ref: 20215
culture collection no.: CCUG 73691, KCTC 72454, MCC 3792
straininfo link
- @ref: 114897
- straininfo: 410734
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 33174829 | Pseudomonas lalkuanensis sp. nov., isolated from a bacterial consortia of contaminated soil enriched for the remediation of e-waste. | Thorat V, Kirdat K, Tiwarekar B, DaCosta E, Debbarma P, Shouche Y, Sathe S, Goel R, Lodha T, Yadav A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004559 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Electronic Waste, Fatty Acids/chemistry, Genes, Bacterial, India, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil Pollutants | Transcriptome |
| Phylogeny | 35819404 | Pseudomonas boanensis sp. nov., a bacterium isolated from river water used for household purposes in Boane District, Mozambique. | Nicklasson M, Martin-Rodriguez AJ, Thorell K, Higdon SM, Neves L, Mussagy A, Rydberg HA, Hernroth B, Svensson-Stadler L, Sjoling A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005461 | 2022 | Bacteria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Mozambique, Nucleic Acid Hybridization, Phylogeny, Pseudomonas, RNA, Ribosomal, 16S/genetics, *Rivers/microbiology, Sequence Analysis, DNA, Water | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 114897 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID410734.1 |