Strain identifier
BacDive ID: 167104
Type strain: 
Species: Spirabiliibacterium mucosae
Strain Designation: 20609/3, HIM 913-3, HIM 913
NCBI tax ID(s): 28156 (species)
version 9.3 (current version)
General
@ref: 20215
BacDive-ID: 167104
DSM-Number: 111429
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Spirabiliibacterium mucosae 20609/3 is a Gram-negative bacterium of the family Pasteurellaceae.
NCBI tax id
- NCBI tax id: 28156
- Matching level: species
doi: 10.13145/bacdive167104.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Spirabiliibacterium
- species: Spirabiliibacterium mucosae
- full scientific name: Spirabiliibacterium mucosae Bisgaard and Christensen 2021
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Spirabiliibacterium
species: Spirabiliibacterium mucosae
full scientific name: Spirabiliibacterium mucosae Bisgaard and Christensen 2021
strain designation: 20609/3, HIM 913-3, HIM 913
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 99 | |
| 125438 | negative | 99 | |
| 125438 | 90.682 | no |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 91.126 |
| 125439 | no | 99.7 |
Sequence information
16S sequences
- @ref: 124043
- description: Bisgaard Taxon 14 strain CCUG 16499 R 16S ribosomal RNA gene, partial sequence.
- accession: L06086
- length: 1485
- database: nuccore
- NCBI tax ID: 28156
Genome sequences
- @ref: 66792
- description: Spirabiliibacterium mucosae 20609_3
- accession: GCA_014884965
- assembly level: contig
- database: ncbi
- NCBI tax ID: 28156
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.857 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 69.211 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.126 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90.682 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 74.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 76.3 |
External links
@ref: 20215
culture collection no.: DSM 111429, CCUG 16499
literature
- topic: Phylogeny
- Pubmed-ID: 33734954
- title: Classification of Bisgaard's taxa 14 and 32 and a taxon from kestrels demonstrating satellitic growth and proposal of Spirabiliibacterium gen. nov., including the description of three species: Spirabiliibacterium mucosae sp. nov., Spirabiliibacterium pneumoniae sp. nov. and Spirabiliibacterium falconis sp. nov.
- authors: Bisgaard M, Christensen H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004758
- year: 2021
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |