Strain identifier
BacDive ID: 167102
Type strain: 
Species: Roseomonas vastitatis
Strain Designation: J1A743
NCBI tax ID(s): 2307076 (species)
version 9.3 (current version)
General
@ref: 20215
BacDive-ID: 167102
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Roseomonas vastitatis J1A743 is a Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
- NCBI tax id: 2307076
- Matching level: species
doi: 10.13145/bacdive167102.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Roseomonas
- species: Roseomonas vastitatis
- full scientific name: Roseomonas vastitatis Zhao et al. 2020
synonyms
@ref synonym 20215 Pseudoroseomonas vastitatis 20215 Teichococcus vastitatis
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Roseomonas
species: Roseomonas vastitatis
full scientific name: Roseomonas vastitatis Zhao et al. 2020
strain designation: J1A743
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 97.9 |
| 125438 | negative | 95.815 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: aerobe
- confidence: 94
spore formation
- @ref: 125439
- spore formation: no
- confidence: 96.2
Sequence information
16S sequences
- @ref: 20215
- description: Pseudoroseomonas vastitatis strain CPCC 101021 16S ribosomal RNA gene, partial sequence
- accession: MK421542
- length: 1475
- database: nuccore
- NCBI tax ID: 2307076
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudoroseomonas vastitatis CPCC 101021 | GCA_003604215 | contig | ncbi | 2307076 |
| 66792 | Roseomonas sp. CPCC 101021 | 2307076.3 | wgs | patric | 2307076 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.815 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.802 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 82.321 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.759 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.518 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 73.63 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 66.1 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 94 |
External links
@ref: 20215
culture collection no.: CPCC 101021, KCTC 62043
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 31860433 | Roseomonas vastitatis sp. nov. isolated from Badain Jaran desert in China. | Zhao LL, Deng Y, Sun Y, Liu HY, Yu LY, Zhang YQ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003898 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Glycolipids/chemistry, Methylobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sand/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 33406032 | Roseomonas coralli sp. nov., a heavy metal resistant bacterium isolated from coral. | Li F, Huang Y, Hu W, Li Z, Wang Q, Huang S, Jiang F, Pan X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004624 | 2021 | Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Metals, Heavy, Methylobacteriaceae/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |