Strain identifier
BacDive ID: 166934
Type strain: 
Species: Thermosipho ferrireducens
Strain Designation: JL129W03
NCBI tax ID(s): 2571116 (species)
version 8.1 (current version)
General
@ref: 20215
BacDive-ID: 166934
keywords: genome sequence, 16S sequence, Bacteria
description: Thermosipho ferrireducens JL129W03 is a bacterium of the family Fervidobacteriaceae.
NCBI tax id
- NCBI tax id: 2571116
- Matching level: species
doi: 10.13145/bacdive166934.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/thermotogota
- domain: Bacteria
- phylum: Thermotogota
- class: Thermotogae
- order: Thermotogales
- family: Fervidobacteriaceae
- genus: Thermosipho
- species: Thermosipho ferrireducens
- full scientific name: Thermosipho ferrireducens Chen et al. 2021
@ref: 20215
domain: Bacteria
phylum: Thermotogota
class: Thermotogae
order: Thermotogales
family: Fervidobacteriaceae
genus: Thermosipho
species: Thermosipho ferrireducens
full scientific name: Thermosipho ferrireducens Chen et al. 2021
strain designation: JL129W03
type strain: yes
Sequence information
16S sequences
- @ref: 20215
- description: Thermosipho ferrireducens strain JL129W03 16S ribosomal RNA gene, partial sequence
- accession: MK818504
- length: 1455
- database: ena
- NCBI tax ID: 2571116
Genome sequences
- @ref: 66792
- description: Thermosipho ferrireducens JL129W03
- accession: GCA_017358165
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2571116
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 90.532 | no |
| gram-positive | no | 94.659 | no |
| anaerobic | yes | 99.41 | no |
| aerobic | no | 99.073 | no |
| halophile | no | 85.392 | no |
| spore-forming | no | 93.379 | no |
| thermophile | yes | 100 | no |
| glucose-util | yes | 88.071 | no |
| motile | yes | 90.198 | no |
| glucose-ferment | no | 52.398 | no |
External links
@ref: 20215
culture collection no.: MCCC 1A14213, KCTC 15905
literature
- topic: Phylogeny
- Pubmed-ID: 34328826
- title: Thermosipho ferrireducens sp.nov., an anaerobic thermophilic iron(III)-reducing bacterium isolated from a deep-sea hydrothermal sulfide deposits.
- authors: Chen Y, He Y, Shao Z, Han X, Chen D, Yang J, Zeng X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004929
- year: 2021
- mesh: Anaerobiosis, Bacteria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, *Iron, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater, Sequence Analysis, DNA, Sulfides
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |