Strain identifier
BacDive ID: 16686
Type strain: 
Species: Syntrophomonas curvata
Strain Designation: GB8-1
Strain history: <- X. Dong, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing; GB8-1 <- CGMCC <- CAS <- C. Zhang and X. Liu
NCBI tax ID(s): 231025 (species)
version 8.1 (current version)
General
@ref: 6034
BacDive-ID: 16686
DSM-Number: 15682
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Syntrophomonas curvata GB8-1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from granular sludge from a lab-scale UASB reactor treating beer wastewater.
NCBI tax id
- NCBI tax id: 231025
- Matching level: species
strain history
- @ref: 6034
- history: <- X. Dong, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing; GB8-1 <- CGMCC <- CAS <- C. Zhang and X. Liu
doi: 10.13145/bacdive16686.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Syntrophomonadaceae
- genus: Syntrophomonas
- species: Syntrophomonas curvata
- full scientific name: Syntrophomonas curvata Zhang et al. 2004
@ref: 6034
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Syntrophomonadaceae
genus: Syntrophomonas
species: Syntrophomonas curvata
full scientific name: Syntrophomonas curvata Zhang et al. 2004
strain designation: GB8-1
type strain: yes
Morphology
cell morphology
- @ref: 30070
- gram stain: negative
- cell length: 3.15 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 6034
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 6034
- name: SYNTHROPHOMONAS MEDIUM (SULFATE FREE) (DSMZ Medium 213)
- growth: yes
- link: https://mediadive.dsmz.de/medium/213
- composition: Name: SYNTHROPHOMONAS MEDIUM (SULFATE FREE) (DSMZ Medium 213; with strain-specific modifications) Composition: Crotonic acid 1.67818 g/l Na2CO3 1.48075 g/l Trypticase peptone 0.987167 g/l KH2PO4 0.493583 g/l NaCl 0.394867 g/l NH4Cl 0.394867 g/l MgCl2 x 6 H2O 0.325765 g/l Na2S x 9 H2O 0.29615 g/l L-Cysteine HCl x H2O 0.29615 g/l CaCl2 x 2 H2O 0.0493583 g/l HCl 0.00246792 g/l FeCl2 x 4 H2O 0.00148075 g/l Sodium resazurin 0.000493583 g/l Pyridoxine hydrochloride 0.00029615 g/l Nicotinic acid 0.000197433 g/l Thiamine-HCl x 2 H2O 0.000197433 g/l CoCl2 x 6 H2O 0.000187562 g/l Vitamin B12 9.87167e-05 g/l Calcium pantothenate 9.87167e-05 g/l MnCl2 x 4 H2O 9.87167e-05 g/l p-Aminobenzoic acid 7.89733e-05 g/l ZnCl2 6.91017e-05 g/l Na2MoO4 x 2 H2O 3.5538e-05 g/l NiCl2 x 6 H2O 2.3692e-05 g/l D-(+)-biotin 1.97433e-05 g/l H3BO3 5.923e-06 g/l CuCl2 x 2 H2O 1.97433e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6034 | positive | growth | 37 | mesophilic |
| 30070 | positive | growth | 20-42 | |
| 30070 | positive | optimum | 36 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30070 | positive | growth | 6.3-8.4 |
| 30070 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 6034 | anaerobe |
| 30070 | anaerobe |
spore formation
- @ref: 30070
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30070 | NaCl | positive | growth | 0-0.5 % |
| 30070 | NaCl | positive | optimum | 0.25 % |
Isolation, sampling and environmental information
isolation
- @ref: 6034
- sample type: granular sludge from a lab-scale UASB reactor treating beer wastewater
- geographic location: Beijing
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Anaerobic digestor |
| #Engineered | #Waste | #Activated sludge |
| #Engineered | #Waste | #Industrial wastewater |
Safety information
risk assessment
- @ref: 6034
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6034
- description: Syntrophomonas flectens 16S ribosomal RNA gene, partial sequence
- accession: AY290767
- length: 1559
- database: ena
- NCBI tax ID: 231025
GC content
- @ref: 6034
- GC-content: 46.6
External links
@ref: 6034
culture collection no.: DSM 15682, CGMCC 1.5010
straininfo link
- @ref: 85705
- straininfo: 132031
literature
- topic: Phylogeny
- Pubmed-ID: 15143051
- title: Syntrophomonas curvata sp. nov., an anaerobe that degrades fatty acids in co-culture with methanogens.
- authors: Zhang C, Liu X, Dong X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02903-0
- year: 2004
- mesh: Bacteria, Anaerobic/*classification/genetics/isolation & purification/*metabolism, Biodegradation, Environmental, Coculture Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/*metabolism, Methane/metabolism, Methanobacterium/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sewage/microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 6034 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15682) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15682 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30070 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26430 | 28776041 | |
| 85705 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID132031.1 | StrainInfo: A central database for resolving microbial strain identifiers |