Strain identifier
BacDive ID: 16682
Type strain:
Species: Syntrophomonas sapovorans
Strain Designation: OM
Strain history: <- E. Samain, OM
NCBI tax ID(s): 66199 (species)
version 8.1 (current version)
General
@ref: 1313
BacDive-ID: 16682
DSM-Number: 3441
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Syntrophomonas sapovorans OM is an anaerobe, mesophilic bacterium that was isolated from mesophilic sewage digester.
NCBI tax id
- NCBI tax id: 66199
- Matching level: species
strain history
- @ref: 1313
- history: <- E. Samain, OM
doi: 10.13145/bacdive16682.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Syntrophomonadaceae
- genus: Syntrophomonas
- species: Syntrophomonas sapovorans
- full scientific name: Syntrophomonas sapovorans Roy et al. 1987
@ref: 1313
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Syntrophomonadaceae
genus: Syntrophomonas
species: Syntrophomonas sapovorans
full scientific name: Syntrophomonas sapovorans Roy et al. 1987
strain designation: OM
type strain: yes
Morphology
colony morphology
- @ref: 1313
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 1313
- name: SYNTROPHOMONAS SAPOVORANS MEDIUM (DSMZ Medium 347)
- growth: yes
- link: https://mediadive.dsmz.de/medium/347
- composition: Name: SYNTROPHOMONAS SAPOVORANS MEDIUM (DSMZ Medium 347) Composition: PIPES 14.8957 g/l Na-laurate 2.76068 g/l CaCl2 x 2 H2O 1.82721 g/l Na2CO3 1.48957 g/l Trypticase peptone 0.993052 g/l KH2PO4 0.496524 g/l NH4Cl 0.39722 g/l NaCl 0.39722 g/l MgCl2 x 6 H2O 0.327706 g/l Na2S x 9 H2O 0.297915 g/l L-Cysteine HCl x H2O 0.297915 g/l HCl 0.00248262 g/l FeCl2 x 4 H2O 0.00148957 g/l Sodium resazurin 0.000496524 g/l Pyridoxine hydrochloride 0.000297915 g/l Nicotinic acid 0.00019861 g/l Thiamine-HCl x 2 H2O 0.00019861 g/l CoCl2 x 6 H2O 0.000188679 g/l MnCl2 x 4 H2O 9.93049e-05 g/l Calcium pantothenate 9.93049e-05 g/l Vitamin B12 9.93049e-05 g/l p-Aminobenzoic acid 7.94439e-05 g/l ZnCl2 6.95134e-05 g/l Na2MoO4 x 2 H2O 3.57498e-05 g/l NiCl2 x 6 H2O 2.38332e-05 g/l D-(+)-biotin 1.9861e-05 g/l H3BO3 5.95829e-06 g/l CuCl2 x 2 H2O 1.9861e-06 g/l Distilled water
culture temp
- @ref: 1313
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1313
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1313
- sample type: mesophilic sewage digester
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Wastewater
taxonmaps
- @ref: 69479
- File name: preview.99_38086.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_397;96_10524;97_12721;98_27952;99_38086&stattab=map
- Last taxonomy: Syntrophomonas sapovorans subclade
- 16S sequence: AF022249
- Sequence Identity:
- Total samples: 387
- soil counts: 26
- aquatic counts: 289
- animal counts: 26
- plant counts: 46
Safety information
risk assessment
- @ref: 1313
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1313
- description: Syntrophomonas sapovorans 16S ribosomal RNA gene, complete sequence
- accession: AF022249
- length: 1521
- database: ena
- NCBI tax ID: 66199
External links
@ref: 1313
culture collection no.: DSM 3441
straininfo link
- @ref: 85702
- straininfo: 47724
literature
- topic: Phylogeny
- Pubmed-ID: 15143051
- title: Syntrophomonas curvata sp. nov., an anaerobe that degrades fatty acids in co-culture with methanogens.
- authors: Zhang C, Liu X, Dong X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02903-0
- year: 2004
- mesh: Bacteria, Anaerobic/*classification/genetics/isolation & purification/*metabolism, Biodegradation, Environmental, Coculture Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/*metabolism, Methane/metabolism, Methanobacterium/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sewage/microbiology
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1313 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3441) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3441 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
85702 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47724.1 | StrainInfo: A central database for resolving microbial strain identifiers |