Strain identifier
BacDive ID: 16678
Type strain: 
Species: Desulfoglaeba alkanexedens
Strain Designation: ALDC
Strain history: J. M. Suflita and I. A. Davidova strain ALDC.
NCBI tax ID(s): 361111 (species)
version 8.1 (current version)
General
@ref: 7416
BacDive-ID: 16678
DSM-Number: 18185
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Desulfoglaeba alkanexedens ALDC is an anaerobe, mesophilic bacterium that was isolated from oily sludge from naval wastewater-storage facility.
NCBI tax id
- NCBI tax id: 361111
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7416 | <- I. A. Davidova and J. M. Suflita, Department of Botany and Microbiology, University of Oklahoma, Norman, USA; ALDC <- I. A. Davidova {2003} |
| 67770 | J. M. Suflita and I. A. Davidova strain ALDC. |
doi: 10.13145/bacdive16678.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Syntrophobacterales
- family: Syntrophobacteraceae
- genus: Desulfoglaeba
- species: Desulfoglaeba alkanexedens
- full scientific name: Desulfoglaeba alkanexedens Davidova et al. 2006
@ref: 7416
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Syntrophobacterales
family: Syntrophobacteraceae
genus: Desulfoglaeba
species: Desulfoglaeba alkanexedens
full scientific name: Desulfoglaeba alkanexedens Davidova et al. 2006
strain designation: ALDC
type strain: yes
Morphology
colony morphology
- @ref: 7416
- incubation period: >14 days
Culture and growth conditions
culture medium
- @ref: 7416
- name: DESULFOGLAEBA MEDIUM (DSMZ Medium 1074)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1074
- composition: Name: DESULFOGLAEBA MEDIUM (DSMZ Medium 1074) Composition: Sea Salt 24.9252 g/l Na2SO4 3.48953 g/l Na2CO3 1.49551 g/l Na-pyruvate 0.997009 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l L-Cysteine HCl x H2O 0.0997009 g/l Na2S x 9 H2O 0.0997009 g/l Yeast extract 0.0498504 g/l MgSO4 x 7 H2O 0.0299103 g/l NaCl 0.00997009 g/l MnSO4 x H2O 0.00498504 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279163 g/l ZnSO4 x 7 H2O 0.00179462 g/l CoCl2 x 6 H2O 0.00179462 g/l CaCl2 x 2 H2O 0.000997009 g/l FeSO4 x 7 H2O 0.000997009 g/l Sodium resazurin 0.000498504 g/l AlK(SO4)2 x 12 H2O 0.000179462 g/l CuSO4 x 5 H2O 9.97009e-05 g/l H3BO3 9.97009e-05 g/l Na2MoO4 x 2 H2O 9.97009e-05 g/l Na2WO4 x 2 H2O 9.97009e-05 g/l Na2SeO4 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l Vitamin B12 9.97009e-07 g/l n-Decane Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7416 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 7416
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7416 | oily sludge from naval wastewater-storage facility | Virginia, Portsmouth | USA | USA | North America |
| 67770 | Naval oily wastewater-storage facility | VA | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_29224.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_165;96_14384;97_17542;98_21796;99_29224&stattab=map
- Last taxonomy: Desulfoglaeba alkanexedens subclade
- 16S sequence: DQ303457
- Sequence Identity:
- Total samples: 416
- soil counts: 46
- aquatic counts: 298
- animal counts: 65
- plant counts: 7
Safety information
risk assessment
- @ref: 7416
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7416
- description: Desulfoglaeba alkanexedens strain ALDC 16S ribosomal RNA gene, partial sequence
- accession: DQ303457
- length: 1495
- database: ena
- NCBI tax ID: 980445
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfoglaeba alkanexedens ALDC | GCA_005377625 | complete | ncbi | 980445 |
| 66792 | Desulfoglaeba alkanexedens ALDC | 980445.7 | complete | patric | 980445 |
| 66792 | Desulfoglaeba alkanexedens ALDC | 2636416042 | draft | img | 980445 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 7416 | 53.6 | |
| 67770 | 53.6 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 84.298 | no |
| flagellated | no | 85.448 | no |
| gram-positive | no | 99.615 | no |
| anaerobic | yes | 99.999 | yes |
| aerobic | no | 99.148 | yes |
| halophile | no | 78.401 | no |
| spore-forming | no | 90.16 | no |
| glucose-util | yes | 54.155 | no |
| thermophile | yes | 82.703 | yes |
| glucose-ferment | no | 77.242 | no |
External links
@ref: 7416
culture collection no.: DSM 18185, ATCC BAA 1302, JCM 13588
straininfo link
- @ref: 85698
- straininfo: 297175
literature
- topic: Phylogeny
- Pubmed-ID: 17158970
- title: Desulfoglaeba alkanexedens gen. nov., sp. nov., an n-alkane-degrading, sulfate-reducing bacterium.
- authors: Davidova IA, Duncan KE, Choi OK, Suflita JM
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64398-0
- year: 2006
- mesh: Alkanes/*metabolism, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Deltaproteobacteria/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Oklahoma, Oxidation-Reduction, Petroleum, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sewage/microbiology, Substrate Specificity, Sulfates/*metabolism, Sulfur-Reducing Bacteria/classification/genetics/isolation & purification/metabolism, Waste Disposal, Fluid/methods
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7416 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18185) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18185 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 85698 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297175.1 | StrainInfo: A central database for resolving microbial strain identifiers |