Archive BacDiveID:10.13145/bacdive16676.20230509.8.1

Strain identifier

BacDive ID: 16676

Type strain:

Species: Desulfovirga adipica

Strain Designation: TsuAS1

Strain history: <- K. Tanaka, National Institute of Bioscience and Human Technology, Agency of Industrial Science and Technology, Tsukuba, Ibaraki, Japan; TsuAS1

NCBI tax ID(s): 149712 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 4576

BacDive-ID: 16676

DSM-Number: 12016

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Desulfovirga adipica TsuAS1 is an anaerobe, mesophilic bacterium that was isolated from municipal wastewater digestor.

NCBI tax id

NCBI tax id: 149712
Matching level: species

strain history

@ref: 4576
history: <- K. Tanaka, National Institute of Bioscience and Human Technology, Agency of Industrial Science and Technology, Tsukuba, Ibaraki, Japan; TsuAS1

doi: 10.13145/bacdive16676.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Deltaproteobacteria
order: Syntrophobacterales
family: Syntrophobacteraceae
genus: Desulfovirga
species: Desulfovirga adipica
full scientific name: Desulfovirga adipica Tanaka et al. 2000

@ref: 4576

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Syntrophobacterales

family: Syntrophobacteraceae

genus: Desulfovirga

species: Desulfovirga adipica

full scientific name: Desulfovirga adipica Tanaka et al. 2000

strain designation: TsuAS1

type strain: yes

Morphology

colony morphology

@ref: 4576
incubation period: 8-14 days

Culture and growth conditions

culture medium

@ref: 4576
name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)
growth: yes
link: https://mediadive.dsmz.de/medium/194
composition: Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l Na2CO3 1.49551 g/l Yeast extract 0.997009 g/l NaCl 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l None Distilled water

culture temp

@ref: 4576
growth: positive
type: growth
temperature: 30
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 4576
oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@ref: 4576
sample type: municipal wastewater digestor
country: Japan
origin.country: JPN
continent: Asia

isolation source categories

Cat1: #Engineered
Cat2: #Waste
Cat3: #Wastewater

taxonmaps

@ref: 69479
File name: preview.99_96166.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_574;96_39349;97_50124;98_65950;99_96166&stattab=map
Last taxonomy: Desulfovirga adipica subclade
16S sequence: AJ237605
Sequence Identity:
Total samples: 704
soil counts: 345
aquatic counts: 334
animal counts: 16
plant counts: 9

Safety information

risk assessment

@ref: 4576
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 4576
description: Syntrophobacter sp. 16S rRNA gene, partial, strain TsuA1
accession: AJ237605
length: 1524
database: ena
NCBI tax ID: 66700

GC content

@ref: 4576
GC-content: 60
method: high performance liquid chromatography (HPLC)

External links

@ref: 4576

culture collection no.: DSM 12016

straininfo link

@ref: 85696
straininfo: 49221

literature

topic: Phylogeny
Pubmed-ID: 10758870
title: Desulfovirga adipica gen. nov., sp. nov., an adipate-degrading, gram-negative, sulfate-reducing bacterium.
authors: Tanaka K, Stackebrandt E, Tohyama S, Eguchi T
journal: Int J Syst Evol Microbiol
DOI: 10.1099/00207713-50-2-639
year: 2000
mesh: Adipates/*metabolism, Anaerobiosis, Base Composition, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/*classification/cytology/isolation & purification/physiology, Industrial Waste, Molecular Sequence Data, Phylogeny, Pigments, Biological, RNA, Ribosomal, 16S/genetics, Sulfur-Reducing Bacteria/*classification/cytology/isolation & purification/physiology, Waste Disposal, Fluid, Water Microbiology
topic2: Cultivation

Reference

@id	authors	catalogue	doi/url	title
4576	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12016)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-12016
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
85696	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID49221.1	StrainInfo: A central database for resolving microbial strain identifiers