Strain identifier
BacDive ID: 16672
Type strain: 
Species: Desulfacinum infernum
Strain Designation: BalphaG1
Strain history: <- G. N. Rees; BalphaG1 <- G. N. Rees {1993}
NCBI tax ID(s): 1121391 (strain), 35837 (species)
version 8.1 (current version)
General
@ref: 3718
BacDive-ID: 16672
DSM-Number: 9756
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic, Gram-negative
description: Desulfacinum infernum BalphaG1 is an anaerobe, thermophilic, Gram-negative bacterium that was isolated from marine petroleum reservoir.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 35837 | species |
| 1121391 | strain |
strain history
- @ref: 3718
- history: <- G. N. Rees; BalphaG1 <- G. N. Rees {1993}
doi: 10.13145/bacdive16672.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Syntrophobacterales
- family: Syntrophobacteraceae
- genus: Desulfacinum
- species: Desulfacinum infernum
- full scientific name: Desulfacinum infernum Rees et al. 1995
@ref: 3718
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Syntrophobacterales
family: Syntrophobacteraceae
genus: Desulfacinum
species: Desulfacinum infernum
full scientific name: Desulfacinum infernum Rees et al. 1995
strain designation: BalphaG1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.997
Culture and growth conditions
culture medium
- @ref: 3718
- name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/195c
- composition: Name: DESULFOBACTER SP. MEDIUM (LACTATE) (DSMZ Medium 195c) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na-L-lactate 2.49252 g/l Na2CO3 1.49551 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 3718
- growth: positive
- type: growth
- temperature: 60
- range: thermophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 3718 | anaerobe | |
| 69480 | anaerobe | 98.692 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.936
Isolation, sampling and environmental information
isolation
- @ref: 3718
- sample type: marine petroleum reservoir
- geographic location: Scotland, North Sea, Beatrice oil field
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Environmental | #Aquatic | #Marine |
Safety information
risk assessment
- @ref: 3718
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3718
- description: Desulfacinum infernum strain BalphaG1 16S ribosomal RNA gene, partial sequence
- accession: L27426
- length: 1544
- database: ena
- NCBI tax ID: 35837
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Desulfacinum infernum DSM 9756 | GCA_900129305 | scaffold | ncbi | 1121391 |
| 66792 | Desulfacinum infernum DSM 9756 | 1121391.4 | wgs | patric | 1121391 |
| 66792 | Desulfacinum infernum DSM 9756 | 2582580750 | draft | img | 1121391 |
GC content
- @ref: 3718
- GC-content: 64
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 64 | no |
| motile | yes | 89.034 | no |
| flagellated | no | 75.774 | no |
| gram-positive | no | 99.663 | no |
| anaerobic | yes | 99.418 | yes |
| aerobic | no | 98.723 | yes |
| halophile | no | 63.953 | no |
| spore-forming | no | 88.198 | no |
| thermophile | yes | 85.768 | yes |
| glucose-util | yes | 60.63 | no |
| glucose-ferment | no | 83.183 | no |
External links
@ref: 3718
culture collection no.: DSM 9756, ACM 3991
straininfo link
- @ref: 85693
- straininfo: 48694
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3718 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9756) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9756 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 85693 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48694.1 | StrainInfo: A central database for resolving microbial strain identifiers |