Strain identifier

BacDive ID: 16671

Type strain: Yes

Species: Syntrophobacterium sulfatireducens

Strain Designation: TB8106

Strain history: <- X. Dong, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing; TB8106 <- S. Chen {2004}

NCBI tax ID(s): 283702 (species)

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General

@ref: 6483

BacDive-ID: 16671

DSM-Number: 16706

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, ovoid-shaped

description: Syntrophobacterium sulfatireducens TB8106 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sludge of UASB reactor.

NCBI tax id

  • NCBI tax id: 283702
  • Matching level: species

strain history

  • @ref: 6483
  • history: <- X. Dong, State Key Lab. Microbial Resources, Inst. Microbiol., Chinese Academy of Sciences, Beijing; TB8106 <- S. Chen {2004}

doi: 10.13145/bacdive16671.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Syntrophobacterales
  • family: Syntrophobacteraceae
  • genus: Syntrophobacterium
  • species: Syntrophobacterium sulfatireducens
  • full scientific name: Syntrophobacterium sulfatireducens (Chen et al. 2005) Galushko and Kuever 2021

  • synonyms

    • @ref: 20215
    • synonym: Syntrophobacter sulfatireducens

@ref: 6483

domain: Bacteria

phylum: Pseudomonadota

class: Deltaproteobacteria

order: Syntrophobacterales

family: Syntrophobacteraceae

genus: Syntrophobacterium

species: Syntrophobacterium sulfatireducens

full scientific name: Syntrophobacterium sulfatireducens

strain designation: TB8106

type strain: yes

Morphology

cell morphology

  • @ref: 31441
  • gram stain: negative
  • cell length: 2 µm
  • cell width: 1.15 µm
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

  • @ref: 6483
  • incubation period: >14 days

Culture and growth conditions

culture medium

  • @ref: 6483
  • name: SYNTHROPHOMONAS MEDIUM (DSMZ Medium 212)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/212
  • composition: Name: SYNTHROPHOMONAS MEDIUM (DSMZ Medium 212; with strain-specific modifications) Composition: Na2SO4 2.79163 g/l Na-propionate 1.49551 g/l Na2CO3 1.49551 g/l Trypticase peptone 0.997008 g/l KH2PO4 0.498505 g/l NaCl 0.398803 g/l NH4Cl 0.398803 g/l MgCl2 x 6 H2O 0.329013 g/l Na2S x 9 H2O 0.299103 g/l L-Cysteine HCl x H2O 0.299103 g/l CaCl2 x 2 H2O 0.0498505 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l Nicotinic acid 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Calcium pantothenate 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6483positivegrowth37mesophilic
31441positivegrowth37mesophilic
31441positiveoptimum20-48

culture pH

@refabilitytypepHPH range
31441positivegrowth6.2-8.8alkaliphile
31441positiveoptimum7.3

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6483anaerobe
31441anaerobe

spore formation

  • @ref: 31441
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31441NaClpositivegrowth<0.58 %
31441NaClpositiveoptimum0.29 %

observation

  • @ref: 31441
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3144117272propionate+carbon source
3144115361pyruvate+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 6483
  • sample type: sludge of UASB reactor
  • geographic location: Beijing
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Anaerobic digestor
#Environmental#Terrestrial#Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_32942.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_574;96_7748;97_9305;98_11421;99_32942&stattab=map
  • Last taxonomy: Syntrophobacter sulfatireducens subclade
  • 16S sequence: AY651787
  • Sequence Identity:
  • Total samples: 1950
  • soil counts: 165
  • aquatic counts: 1585
  • animal counts: 115
  • plant counts: 85

Safety information

risk assessment

  • @ref: 6483
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6483
  • description: Syntrophobacter sulfatireducens strain TB8106 16S ribosomal RNA gene, complete sequence
  • accession: AY651787
  • length: 1554
  • database: ena
  • NCBI tax ID: 283702

GC content

@refGC-contentmethod
648359thermal denaturation, midpoint method (Tm)
3144158.5

External links

@ref: 6483

culture collection no.: DSM 16706, AS 1.5016, CGMCC 1.5016

straininfo link

  • @ref: 85692
  • straininfo: 139013

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15879275Syntrophobacter sulfatireducens sp. nov., a novel syntrophic, propionate-oxidizing bacterium isolated from UASB reactors.Chen S, Liu X, Dong XInt J Syst Evol Microbiol10.1099/ijs.0.63565-02005Acetic Acid/metabolism, Anaerobiosis, Base Composition, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Deltaproteobacteria/*classification/cytology/*isolation & purification/physiology, Fumarates/metabolism, Genes, rRNA, Gentian Violet, Hydrogen-Ion Concentration, Methane/metabolism, Molecular Sequence Data, Oxidation-Reduction, Phenazines, Phylogeny, Propionates/*metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Sulfates/metabolism, Temperature, Thiosulfates/metabolism, *Water MicrobiologyMetabolism
Phylogeny35960659Desulfoferrobacter suflitae gen. nov., sp. nov., a novel sulphate-reducing bacterium in the Deltaproteobacteria capable of autotrophic growth with hydrogen or elemental iron.Davidova IA, Duncan KE, Wiley G, Najar FZInt J Syst Evol Microbiol10.1099/ijsem.0.0054832022Autotrophic Processes, Bacterial Typing Techniques, Base Composition, Carbon Dioxide, DNA, Bacterial/genetics, *Deltaproteobacteria, Fatty Acids/chemistry, Hydrogen, Iron, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, SulfatesTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6483Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16706)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16706
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31441Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2774528776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85692Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID139013.1StrainInfo: A central database for resolving microbial strain identifiers