Strain identifier
BacDive ID: 1667
Type strain: 
Species: Beijerinckia mobilis
Strain history: <- UQM
NCBI tax ID(s): 231434 (species)
version 9.3 (current version)
General
@ref: 733
BacDive-ID: 1667
DSM-Number: 2326
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Beijerinckia mobilis DSM 2326 is a mesophilic, Gram-negative bacterium of the family Beijerinckiaceae.
NCBI tax id
- NCBI tax id: 231434
- Matching level: species
strain history
- @ref: 733
- history: <- UQM
doi: 10.13145/bacdive1667.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Beijerinckiaceae
- genus: Beijerinckia
- species: Beijerinckia mobilis
- full scientific name: Beijerinckia mobilis Derx 1950 (Approved Lists 1980)
@ref: 733
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Beijerinckiaceae
genus: Beijerinckia
species: Beijerinckia mobilis
full scientific name: Beijerinckia mobilis Derx 1950
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 97.8 |
| 125438 | negative | 97.885 |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 733 | HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) | yes | https://mediadive.dsmz.de/medium/428 | Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water |
| 733 | BEIJERINCKIA MEDIUM (DSMZ Medium 111) | yes | https://mediadive.dsmz.de/medium/111 | Name: BEIJERINCKIA MEDIUM (DSMZ Medium 111) Composition: Agar 15.7895 g/l Glucose 10.5263 g/l K2HPO4 0.842105 g/l KH2PO4 0.210526 g/l MgSO4 x 7 H2O 0.105263 g/l FeSO4 x 7 H2O 0.0210526 g/l ZnSO4 x 6 H2O 0.00526316 g/l Na2MoO4 x 2 H2O 0.00526316 g/l CuSO4 x 6 H2O 0.00421053 g/l MnSO4 x 6 H2O 0.00210526 g/l Distilled water |
culture temp
- @ref: 733
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 99
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_6683.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_841;97_2572;98_4929;99_6683&stattab=map
- Last taxonomy: Beijerinckia mobilis subclade
- 16S sequence: AB119200
- Sequence Identity:
- Total samples: 2116
- soil counts: 1054
- aquatic counts: 910
- animal counts: 89
- plant counts: 63
Safety information
risk assessment
- @ref: 733
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Beijerinckia mobilis gene for 16S rRNA | AB119200 | 1433 | nuccore | 231434 |
| 20218 | Beijerinckia mobilis partial 16S rRNA gene, strain DSM 2326 | AJ563932 | 1431 | nuccore | 231434 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Beijerinckia mobilis UQM 1969 | GCA_000745425 | scaffold | ncbi | 231434 |
| 66792 | Beijerinckia mobilis strain UQM 1969 | 231434.5 | wgs | patric | 231434 |
| 66792 | Beijerinckia mobilis UQM 1969, DSM 2326 | 2576861816 | draft | img | 231434 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.885 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.949 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.456 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.166 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.564 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 69.142 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 99 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 72.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 97.8 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 79.6 |
External links
@ref: 733
culture collection no.: DSM 2326, ATCC 35011, UQM 1969, CCUG 51003, LMG 3912, NCCB 50027
straininfo link
- @ref: 71314
- straininfo: 1232
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 733 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2326) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2326 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 71314 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1232.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |