Strain identifier
BacDive ID: 16657
Type strain: 
Species: Smithella propionica
Strain Designation: LYP
Strain history: <- D. R. Boone; LYP
NCBI tax ID(s): 92485 (species)
version 8.1 (current version)
General
@ref: 6654
BacDive-ID: 16657
DSM-Number: 16934
keywords: 16S sequence, Bacteria, anaerobe
description: Smithella propionica LYP is an anaerobe bacterium that was isolated from up-flow anaerobic filter inoculated with digested domestic sewage sludge.
NCBI tax id
- NCBI tax id: 92485
- Matching level: species
strain history
- @ref: 6654
- history: <- D. R. Boone; LYP
doi: 10.13145/bacdive16657.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Syntrophobacterales
- family: Syntrophaceae
- genus: Smithella
- species: Smithella propionica
- full scientific name: Smithella propionica Liu et al. 1999
@ref: 6654
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Syntrophobacterales
family: Syntrophaceae
genus: Smithella
species: Smithella propionica
full scientific name: Smithella propionica Liu et al. 1999
strain designation: LYP
type strain: yes
Morphology
colony morphology
- @ref: 6654
- incubation period: >14 days
Physiology and metabolism
oxygen tolerance
- @ref: 6654
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 6654
- sample type: up-flow anaerobic filter inoculated with digested domestic sewage sludge
- geographic location: Beijing
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Engineered | #Waste | #Sewage sludge |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_72382.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_278;96_4668;97_5658;98_24425;99_72382&stattab=map
- Last taxonomy: Smithella propionica subclade
- 16S sequence: AF126282
- Sequence Identity:
- Total samples: 285
- soil counts: 49
- aquatic counts: 220
- animal counts: 11
- plant counts: 5
Safety information
risk assessment
- @ref: 6654
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6654
- description: Syntrophus sp. LYP 16S ribosomal RNA, partial sequence
- accession: AF126282
- length: 1371
- database: ena
- NCBI tax ID: 92485
External links
@ref: 6654
culture collection no.: DSM 16934, OCM 661
straininfo link
- @ref: 85678
- straininfo: 100955
literature
- topic: Phylogeny
- Pubmed-ID: 10319475
- title: Characterization of the anaerobic propionate-degrading syntrophs Smithella propionica gen. nov., sp. nov. and Syntrophobacter wolinii.
- authors: Liu Y, Balkwill DL, Aldrich HC, Drake GR, Boone DR
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-2-545
- year: 1999
- mesh: Acetates/metabolism, Bacteria, Anaerobic/*classification/genetics/isolation & purification/physiology, Biodegradation, Environmental, Bioreactors, Butyrates/metabolism, Coculture Techniques, DNA, Ribosomal/analysis, Euryarchaeota/genetics/metabolism, Formates/metabolism, Hydrogen/metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, Propionates/*metabolism, RNA, Ribosomal, 16S/genetics, Temperature
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6654 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16934) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16934 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 85678 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100955.1 | StrainInfo: A central database for resolving microbial strain identifiers |