Strain identifier
BacDive ID: 16650
Type strain: 
Species: Saccharolobus solfataricus
Strain Designation: P1
Strain history: DSM 1616 <-- W. Zillig P1.
NCBI tax ID(s): 2287 (species)
version 8.1 (current version)
General
@ref: 831
BacDive-ID: 16650
DSM-Number: 1616
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Saccharolobus solfataricus P1 is a thermophilic archaeon that was isolated from volcanic hot spring.
NCBI tax id
- NCBI tax id: 2287
- Matching level: species
strain history
| @ref | history |
|---|---|
| 831 | <- Replacement from W. Zillig (<- W. Zillig, P1) |
| 67770 | DSM 1616 <-- W. Zillig P1. |
doi: 10.13145/bacdive16650.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Sulfolobales
- family: Sulfolobaceae
- genus: Saccharolobus
- species: Saccharolobus solfataricus
- full scientific name: Saccharolobus solfataricus (Zillig et al. 1980) Sakai and Kurosawa 2018
synonyms
- @ref: 20215
- synonym: Sulfolobus solfataricus
@ref: 831
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Saccharolobus
species: Saccharolobus solfataricus
full scientific name: Saccharolobus solfataricus (Zillig et al. 1980) Sakai and Kurosawa 2018
strain designation: P1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 831
- name: SACCHAROLOBUS SOLFATARICUS MEDIUM (DSMZ Medium 182)
- growth: yes
- link: https://mediadive.dsmz.de/medium/182
- composition: Name: SACCHAROLOBUS SOLFATARICUS MEDIUM (DSMZ Medium 182) Composition: KH2PO4 3.1 g/l (NH4)2SO4 2.5 g/l Casamino acids 1.0 g/l Yeast extract 1.0 g/l CaCl2 x 2 H2O 0.25 g/l MgSO4 x 7 H2O 0.2 g/l Na2B4O7 x 10 H2O 0.0045 g/l MnCl2 x 4 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.00022 g/l CuCl2 x 2 H2O 5e-05 g/l VOSO4 x 2 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l CoSO4 x 7 H2O 1e-05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 831 | positive | growth | 70 | thermophilic |
| 67770 | positive | growth | 80 | hyperthermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 831 | volcanic hot spring | Campi flegrei, Pisciarelli near Agnano | Italy | ITA | Europe |
| 67770 | Volcanic hot spring at Pisciarelli Solfatara | Italy | ITA | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Environmental | #Terrestrial | #Volcanic |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 831
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Sulfolobus solfataricus 16S rRNA gene complete sequence and 23S rRNA gene 5' region | D26490 | 2488 | ena | 2287 |
| 20218 | S.solfataricus DNA for 16S ribosomal RNA gene, strain DSM 1616 | X90478 | 1436 | ena | 2287 |
| 831 | Saccharolobus solfataricus strain IFO 15331 16S ribosomal RNA, partial sequence | NR_029127 | 1495 | nuccore | 2287 |
Genome sequences
- @ref: 67770
- description: Saccharolobus solfataricus P1
- accession: GCA_900079115
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2287
GC content
| @ref | GC-content | method |
|---|---|---|
| 831 | 36.0 | |
| 67770 | 34 | high performance liquid chromatography (HPLC) |
| 67770 | 40 | Buoyant density centrifugation (BD) |
| 67770 | 33.7 | thermal denaturation, midpoint method (Tm) |
| 67770 | 33.7 | high performance liquid chromatography (HPLC) |
| 67770 | 36.1 | high performance liquid chromatography (HPLC) |
| 67770 | 36 | thermal denaturation, midpoint method (Tm) |
| 67770 | 34 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 831
culture collection no.: DSM 1616, ATCC 35091, JCM 8930, IFO 15158, IFO 15331, NBRC 15158, NBRC 15331
straininfo link
- @ref: 85671
- straininfo: 40867
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 7592428 | Isolation and cloning of a protein-serine/threonine phosphatase from an archaeon. | Leng J, Cameron AJ, Buckel S, Kennelly PJ | J Bacteriol | 10.1128/jb.177.22.6510-6517.1995 | 1995 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, Conserved Sequence, Escherichia coli/genetics, Genes, Bacterial/*genetics, Molecular Sequence Data, Phosphoprotein Phosphatases/biosynthesis/*genetics/*isolation & purification, Phylogeny, Polymerase Chain Reaction/methods, Sequence Alignment, Sequence Analysis, Sequence Analysis, DNA, Sulfolobus/*enzymology/genetics | Enzymology |
| Enzymology | 16466637 | Purifications and characterizations of a ferredoxin and its related 2-oxoacid:ferredoxin oxidoreductase from the hyperthermophilic archaeon, Sulfolobus solfataricus P1. | Park YJ, Yoo CB, Choi SY, Lee HB | J Biochem Mol Biol | 10.5483/bmbrep.2006.39.1.046 | 2006 | Amino Acid Sequence, *Archaeal Proteins/chemistry/genetics/isolation & purification/metabolism, *Ferredoxins, Hydrogen-Ion Concentration, Molecular Sequence Data, Molecular Weight, *Pyruvate Synthase/chemistry/genetics/isolation & purification/metabolism, Sequence Homology, Amino Acid, Substrate Specificity, *Sulfolobus solfataricus/chemistry/enzymology, Temperature | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 831 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1616) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1616 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 85671 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40867.1 | StrainInfo: A central database for resolving microbial strain identifiers |