Strain identifier
BacDive ID: 166496
Type strain: 
Species: Mycobacterium attenuatum
Strain Designation: MK41
Strain history: <- F. Tagini, Lausanne University Hospital; MK41
NCBI tax ID(s): 2341086 (species)
version 9.3 (current version)
General
@ref: 67931
BacDive-ID: 166496
DSM-Number: 107153
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium attenuatum MK41 is a mesophilic bacterium that was isolated from bronchial secretions of a patient known for Still's disease.
NCBI tax id
- NCBI tax id: 2341086
- Matching level: species
strain history
- @ref: 69047
- history: <- F. Tagini, Lausanne University Hospital; MK41
doi: 10.13145/bacdive166496.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium attenuatum
- full scientific name: Mycobacterium attenuatum Tagini et al. 2019
@ref: 67931
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium attenuatum
full scientific name: Mycobacterium attenuatum Tagini et al. 2019
strain designation: MK41
type strain: yes
Morphology
cell morphology
- @ref: 125439
- gram stain: positive
- confidence: 94.7
colony morphology
- @ref: 67931
- colony color: beige
- incubation period: 14 days
- medium used: 7H10
pigmentation
- @ref: 67931
- production: yes
- name: Phptochrome
Culture and growth conditions
culture medium
- @ref: 69047
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium645.pdf
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67931 | positive | optimum | 37 |
| 67931 | no | growth | 25 |
| 67931 | no | growth | 45 |
| 69047 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.3
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 67931 | 53426 | tween 80 | + | hydrolysis |
| 67931 | 75248 | potassium tellurite | - | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 67931 | nitrate reductase | + | 1.7.99.4 |
| 67931 | urease | + | 3.5.1.5 |
| 67931 | catalase | + | 1.11.1.6 |
| 67931 | arylsulfatase | - | 3.1.6.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 67931 | bronchial secretions (aspiration of bronchial secretions) of a patient known for Still's disease | Lausanne University Hospital | Switzerland | CHE | Europe | ||
| 69047 | Bronchial aspiration (Human) | Lausanne | Switzerland | CHE | Europe | 46.52 | 6.6336 |
taxonmaps
- @ref: 69479
- File name: preview.99_75.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_37;97_39;98_43;99_75&stattab=map
- Last taxonomy: Mycobacterium
- 16S sequence: LS999934
- Sequence Identity:
- Total samples: 1520
- soil counts: 881
- aquatic counts: 382
- animal counts: 203
- plant counts: 54
Sequence information
16S sequences
- @ref: 67931
- description: Mycobacterium sp. MK41 partial 16S rRNA gene, strain MK41 = CCUG 72127 = DSM 107153, isolate MK41, clone MK41
- accession: LS999934
- length: 1525
- database: nuccore
- NCBI tax ID: 2341086
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium attenuatum MK41 | GCA_900566085 | contig | ncbi | 2341086 |
| 66792 | Mycobacterium attenuatum MK41 | 2868392912 | draft | img | 2341086 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 67.2 |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 88.5 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 94.7 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.3 |
External links
@ref: 67931
culture collection no.: CCUG 72127, DSM 107153
straininfo link
- @ref: 114801
- straininfo: 403977
literature
- topic: Phylogeny
- Pubmed-ID: 30950782
- title: Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.
- authors: Tagini F, Aeby S, Bertelli C, Droz S, Casanova C, Prod'hom G, Jaton K, Greub G
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.003378
- year: 2019
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Mycobacterium/*classification, Mycobacterium kansasii/*classification, Nucleic Acid Hybridization, *Phylogeny, Sequence Analysis, DNA, *Whole Genome Sequencing
- topic2: Genetics
Reference
| @id | authors | title | doi/url | journal | catalogue |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67931 | Florian Tagini, Sébastien Aeby, Claire Bertelli, Sara Droz, Carlo Casanova, Guy Prod'hom, Katia Jaton, Gilbert Greub | Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov. | 10.1099/ijsem.0.003378 | IJSEM 69: 1696-1704 2019 | |
| 69047 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107153 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107153) | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 114801 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403977.1 | ||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |