Strain identifier
BacDive ID: 16649
Type strain:
Species: Sulfolobus acidocaldarius
Strain Designation: 98-3
Strain history: DSM 639 <-- T. D. Brock 98-3.
NCBI tax ID(s): 330779 (strain), 2285 (species)
General
@ref: 341
BacDive-ID: 16649
DSM-Number: 639
keywords: genome sequence, 16S sequence, Archaea, anaerobe, spore-forming, thermophilic, Gram-negative
description: Sulfolobus acidocaldarius 98-3 is an anaerobe, spore-forming, thermophilic archaeon that was isolated from acid hot spring.
NCBI tax id
NCBI tax id | Matching level |
---|---|
330779 | strain |
2285 | species |
strain history
@ref | history |
---|---|
341 | <- T. D. Brock, University of Wisconsin, Department of Bacteriology, Madison, Wisconsin, USA; 98-3 |
67770 | DSM 639 <-- T. D. Brock 98-3. |
doi: 10.13145/bacdive16649.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Sulfolobales
- family: Sulfolobaceae
- genus: Sulfolobus
- species: Sulfolobus acidocaldarius
- full scientific name: Sulfolobus acidocaldarius Brock et al. 1972 (Approved Lists 1980)
@ref: 341
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Sulfolobus
species: Sulfolobus acidocaldarius
full scientific name: Sulfolobus acidocaldarius Brock et al. 1972
strain designation: 98-3
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.957
Culture and growth conditions
culture medium
- @ref: 341
- name: SULFOLOBUS MEDIUM (DSMZ Medium 88)
- growth: yes
- link: https://mediadive.dsmz.de/medium/88
- composition: Name: SULFOLOBUS MEDIUM (DSMZ Medium 88) Composition: (NH4)2SO4 1.28713 g/l Yeast extract 0.990099 g/l KH2PO4 0.277228 g/l MgSO4 x 7 H2O 0.247525 g/l CaCl2 x 2 H2O 0.0693069 g/l FeCl3 x 6 H2O 0.019802 g/l Na2B4O7 x 10 H2O 0.00445545 g/l MnCl2 x 4 H2O 0.00178218 g/l ZnSO4 x 7 H2O 0.000217822 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Na2MoO4 x 2 H2O 2.9703e-05 g/l VOSO4 x 2 H2O 2.9703e-05 g/l CoSO4 x 7 H2O 9.90099e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
341 | positive | growth | 70 | thermophilic | |
67770 | positive | growth | 70 | thermophilic | |
69480 | thermophilic | 99.999 |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 91.954
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | no | 99.975 |
compound production
@ref | compound |
---|---|
341 | citrate synthase |
341 | restriction endonuclease SnaI |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
341 | acid hot spring | Wyoming, Yellowstone Natl. Park | USA | USA | North America |
67770 | Locomotive Spring in Yellowstone National Park | WY | USA | USA | North America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Acidic | |
#Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_187210.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17922;96_68864;97_89511;98_121792;99_187210&stattab=map
- Last taxonomy: Sulfolobus acidocaldarius subclade
- 16S sequence: JQ346764
- Sequence Identity:
- Total samples: 23
- soil counts: 1
- aquatic counts: 22
Safety information
risk assessment
- @ref: 341
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sulfolobus acidocaldarius gene for 16S ribosomal RNA, complete sequence | D14876 | 2080 | ena | 2285 |
20218 | Sulfolobus acidocaldarius strain 98-3 16S ribosomal RNA gene, partial sequence | JQ346764 | 1278 | ena | 2285 |
341 | Sulfolobus acidocaldarius 16S rRNA | D14053 | 1463 | ena | 2285 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sulfolobus acidocaldarius DSM 639 | GCA_000012285 | complete | ncbi | 330779 |
66792 | Sulfolobus acidocaldarius 98-3, DSM 639 | 638154517 | complete | img | 330779 |
66792 | Sulfolobus acidocaldarius DSM 639 | 330779.12 | complete | patric | 330779 |
66792 | Sulfolobus acidocaldarius DSM 639 | GCA_028472365 | complete | ncbi | 330779 |
GC content
@ref | GC-content | method |
---|---|---|
341 | 37.0 | |
67770 | 41 | Buoyant density centrifugation (BD) |
67770 | 39 | high performance liquid chromatography (HPLC) |
67770 | 37 | thermal denaturation, midpoint method (Tm) |
67770 | 39.9 | Buoyant density centrifugation (BD) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 76.337 | no |
flagellated | no | 96.876 | no |
gram-positive | no | 94.001 | no |
anaerobic | yes | 74.409 | no |
halophile | no | 74.815 | no |
spore-forming | no | 96.591 | no |
thermophile | yes | 100 | yes |
glucose-util | yes | 85.508 | no |
aerobic | no | 71.91 | no |
glucose-ferment | no | 83.098 | no |
External links
@ref: 341
culture collection no.: DSM 639, ATCC 33909, NCIMB 11770, JCM 8929, IFO 15157, NBRC 15157
straininfo link
- @ref: 85670
- straininfo: 47247
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 1321720 | Characterization and purification of a membrane-bound archaebacterial pyrophosphatase from Sulfolobus acidocaldarius. | Meyer W, Schafer G | Eur J Biochem | 10.1111/j.1432-1033.1992.tb17104.x | 1992 | Amino Acid Sequence, Bacitracin/pharmacology, Catalysis, Cell Membrane/enzymology, Enzyme Activation, Glycosylation, Hydrogen-Ion Concentration, Lipids/pharmacology, Molecular Sequence Data, Molecular Weight, Protein Processing, Post-Translational, Pyrophosphatases/chemistry/*isolation & purification/metabolism, Sulfolobus/*enzymology, Temperature | Genetics |
Enzymology | 1332857 | EPR studies of cytochrome aa3 from Sulfolobus acidocaldarius. Evidence for a binuclear center in archaebacterial terminal oxidase. | Anemuller S, Bill E, Schafer G, Trautwein AX, Teixeira M | Eur J Biochem | 10.1111/j.1432-1033.1992.tb17400.x | 1992 | Electron Spin Resonance Spectroscopy, Electron Transport Complex IV/*chemistry, Oxidation-Reduction, Paracoccus denitrificans/enzymology, Sulfolobus/*enzymology | |
Metabolism | 2478523 | Chemiosmotic energy conversion of the archaebacterial thermoacidophile Sulfolobus acidocaldarius: oxidative phosphorylation and the presence of an F0-related N,N'-dicyclohexylcarbodiimide-binding proteolipid. | Lubben M, Schafer G | J Bacteriol | 10.1128/jb.171.11.6106-6116.1989 | 1989 | Adenosine Triphosphate/*metabolism, Amino Acid Sequence, Archaea/*metabolism, Bacteria/*metabolism, Carbodiimides/*metabolism, Cell Membrane/metabolism, Dicyclohexylcarbodiimide/*metabolism/pharmacology, Energy Metabolism, Escherichia coli/metabolism, Gramicidin/pharmacology, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Osmolar Concentration, *Oxidative Phosphorylation/drug effects, Oxygen Consumption, Protein Binding, Proteolipids/isolation & purification/*metabolism, Proton-Translocating ATPases/*metabolism, Sequence Homology, Nucleic Acid | Enzymology |
Enzymology | 2501756 | Organization and nucleotide sequence of the genes encoding the large subunits A, B and C of the DNA-dependent RNA polymerase of the archaebacterium Sulfolobus acidocaldarius. | Puhler G, Lottspeich F, Zillig W | Nucleic Acids Res | 10.1093/nar/17.12.4517 | 1989 | Amino Acid Sequence, Archaea/enzymology/*genetics, Bacteria/*genetics, Bacterial Proteins/*genetics/isolation & purification, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA, Bacterial/isolation & purification, DNA-Directed RNA Polymerases/*genetics/isolation & purification, *Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Transcription, Genetic | Phylogeny |
Enzymology | 2952501 | A plasma-membrane associated ATPase from the thermoacidophilic archaebacterium Sulfolobus acidocaldarius. | Lubben M, Schafer G | Eur J Biochem | 10.1111/j.1432-1033.1987.tb11159.x | 1987 | Adenosine Triphosphatases/antagonists & inhibitors/*isolation & purification/metabolism, Archaea/*enzymology, Bacteria/*enzymology, Cell Membrane/enzymology, Centrifugation, Density Gradient, Electrophoresis, Polyacrylamide Gel, Hot Temperature, Hydrogen-Ion Concentration, Ions/pharmacology, Kinetics, Microscopy, Electron, Substrate Specificity | Stress |
7609602 | The structure of the core polyol of the ether lipids from Sulfolobus acidocaldarius. | Sugai A, Sakuma R, Fukuda I, Kurosawa N, Itoh YH, Kon K, Ando S, Itoh T | Lipids | 10.1007/BF02536042 | 1995 | Acetylation, Diglycerides/*chemistry, Ethers, Glyceryl Ethers/*chemistry, Glycolipids/*chemistry, Lipids/*chemistry, Magnetic Resonance Spectroscopy, Molecular Structure, Sulfolobus/*chemistry | ||
Genetics | 7711082 | Nucleotide sequence of a gene cluster encoding ribosomal proteins in the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius. | Moll R, Schmidtke S, Schafer G | Biochim Biophys Acta | 10.1016/0167-4781(95)00024-b | 1995 | Amino Acid Sequence, Base Sequence, *Genes, Bacterial, Molecular Sequence Data, *Multigene Family, Open Reading Frames, RNA, Messenger/chemistry, Ribosomal Proteins/*genetics, Sequence Alignment, Sulfolobus acidocaldarius/*genetics | |
Enzymology | 8106509 | Purification and characterization of reverse gyrase from Sulfolobus shibatae. Its proteolytic product appears as an ATP-independent topoisomerase. | Nadal M, Couderc E, Duguet M, Jaxel C | J Biol Chem | S0021-9258(17)37682-2 | 1994 | Adenosine Triphosphate/metabolism, Amino Acids/analysis, Bacteriophages/metabolism, Blotting, Western, Centrifugation, Density Gradient, Chromatography, Affinity, Chromatography, Ion Exchange, DNA Topoisomerases, Type I/*isolation & purification/*metabolism, DNA Topoisomerases, Type II/chemistry/*isolation & purification/*metabolism, DNA, Viral/isolation & purification/*metabolism, Electrophoresis, Polyacrylamide Gel, Endopeptidases, Kinetics, Molecular Weight, Protein Conformation, Substrate Specificity, Sulfolobus/*enzymology, Ultracentrifugation | Metabolism |
Phylogeny | 8288546 | Strain identification and 5S rRNA gene characterization of the hyperthermophilic archaebacterium Sulfolobus acidocaldarius. | Durovic P, Kutay U, Schleper C, Dennis PP | J Bacteriol | 10.1128/jb.176.2.514-517.1994 | 1994 | Base Sequence, Molecular Sequence Data, Nucleic Acid Conformation, RNA Precursors/genetics, RNA, Ribosomal, 5S/*genetics, Sequence Homology, Nucleic Acid, Species Specificity, Sulfolobus/*classification/genetics, Sulfolobus acidocaldarius/*genetics | Genetics |
Enzymology | 8389456 | Reverse gyrase: a helicase-like domain and a type I topoisomerase in the same polypeptide. | Confalonieri F, Elie C, Nadal M, de La Tour C, Forterre P, Duguet M | Proc Natl Acad Sci U S A | 10.1073/pnas.90.10.4753 | 1993 | Amino Acid Sequence, Bacterial Proteins/genetics, Cloning, Molecular, DNA Topoisomerases, Type I/*genetics, DNA Topoisomerases, Type II/*genetics, DNA, Bacterial/genetics, Eukaryotic Initiation Factor-4A, *Genes, Bacterial, Molecular Sequence Data, Peptide Initiation Factors/genetics, Restriction Mapping, Sequence Alignment, Sulfolobus/enzymology/*genetics | Genetics |
Enzymology | 8489243 | Archaebacterial adenylate kinase from the thermoacidophile Sulfolobus acidocaldarius: purification, characterization, and partial sequence. | Lacher K, Schafer G | Arch Biochem Biophys | 10.1006/abbi.1993.1229 | 1993 | Adenosine Monophosphate/metabolism, Adenosine Triphosphate/metabolism, Adenylate Kinase/genetics/*isolation & purification/metabolism, Amino Acid Sequence, Hot Temperature, Hydrogen-Ion Concentration, Kinetics, Molecular Sequence Data, Molecular Weight, Sequence Analysis, Sequence Homology, Amino Acid, Substrate Specificity, Sulfolobus acidocaldarius/*enzymology/genetics | Metabolism |
Genetics | 8521862 | Identification of the iron-sulfur clusters in a ferredoxin from the archaeon Sulfolobus acidocaldarius. Evidence for a reduced [3Fe-4S] cluster with pH-dependent electronic properties. | Breton JL, Duff JL, Butt JN, Armstrong FA, George SJ, Petillot Y, Forest E, Schafer G, Thomson AJ | Eur J Biochem | 10.1111/j.1432-1033.1995.937_3.x | 1995 | Amino Acid Sequence, Electrochemistry, Ferredoxins/*chemistry, Hydrogen-Ion Concentration, Iron/*chemistry, Molecular Sequence Data, Oxidation-Reduction, Sulfolobus acidocaldarius/*chemistry, Sulfur/*chemistry | |
Enzymology | 8654586 | Two different respiratory Rieske proteins are expressed in the extreme thermoacidophilic crenarchaeon Sulfolobus acidocaldarius: cloning and sequencing of their genes. | Schmidt CL, Anemuller S, Schafer G | FEBS Lett | 10.1016/0014-5793(96)00511-x | 1996 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, Conserved Sequence/genetics, *Electron Transport Complex III, Genes, Bacterial/*genetics, Iron-Sulfur Proteins/chemistry/*genetics, Molecular Sequence Data, Phylogeny, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sulfolobus acidocaldarius/chemistry/*genetics | Genetics |
Enzymology | 8674972 | Isolation, characterization and crystallization of an iron-superoxide dismutase from the crenarchaeon Sulfolobus acidocaldarius. | Kardinahl S, Schmidt CL, Petersen A, Schafer G | FEMS Microbiol Lett | 10.1111/j.1574-6968.1996.tb08136.x | 1996 | Amino Acid Sequence, Crystallization, Cytosol/enzymology, Electron Spin Resonance Spectroscopy, Enzyme Stability, Molecular Sequence Data, Molecular Weight, Protein Conformation, Spectrophotometry, Sulfolobus acidocaldarius/*enzymology/genetics, Superoxide Dismutase/chemistry/genetics/*isolation & purification | Phylogeny |
Metabolism | 8841122 | Resonance Raman spectroscopy of the integral quinol oxidase complex of Sulfolobus acidocaldarius. | Gerscher S, Dopner S, Hildebrandt P, Gleissner M, Schafer G | Biochemistry | 10.1021/bi960896d | 1996 | Animals, Cattle, Electron Transport Complex IV/chemistry, Heme/chemistry, Histidine/metabolism, Oxidation-Reduction, Oxidoreductases/*chemistry/metabolism, Spectrophotometry, Spectrum Analysis, Raman, Structure-Activity Relationship, Sulfolobus acidocaldarius/*enzymology | Enzymology |
Metabolism | 8922285 | Three extremely thermostable proteins from Sulfolobus and a reappraisal of the 'traffic rules'. | Schafer T, Bonisch H, Kardinahl S, Schmidt C, Schafer G | Biol Chem | 1996 | Adenylate Kinase/chemistry/genetics/*metabolism, Amino Acid Sequence, Enzyme Stability, Escherichia coli/genetics, Hot Temperature, Molecular Sequence Data, Pyrophosphatases/chemistry/genetics/*metabolism, Recombinant Proteins/genetics/metabolism, Sequence Homology, Amino Acid, Sulfolobus/*enzymology, Superoxide Dismutase/chemistry/genetics/*metabolism | Enzymology | |
Enzymology | 8980629 | Cloning and sequencing of a cluster of genes encoding novel enzymes of trehalose biosynthesis from thermophilic archaebacterium Sulfolobus acidocaldarius. | Maruta K, Mitsuzumi H, Nakada T, Kubota M, Chaen H, Fukuda S, Sugimoto T, Kurimoto M | Biochim Biophys Acta | 10.1016/s0304-4165(96)00082-7 | 1996 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial, Genes, Bacterial, Glycogen Debranching Enzyme System/*genetics, Molecular Sequence Data, *Multigene Family, Open Reading Frames, Sulfolobus/enzymology/*genetics, Trehalose/*biosynthesis | Genetics |
Enzymology | 9063973 | Purification and characterization of thermostable maltooligosyl trehalose synthase from the thermoacidophilic archaebacterium Sulfolobus acidocaldarius. | Nakada T, Ikegami S, Chaen H, Kubota M, Fukuda S, Sugimoto T, Kurimoto M, Tsujisaka Y | Biosci Biotechnol Biochem | 10.1271/bbb.60.263 | 1996 | Amino Acid Sequence, Chemical Phenomena, Chemistry, Physical, Enzyme Stability, Glucosyltransferases/*metabolism, Hot Temperature, Kinetics, Molecular Sequence Data, Oligosaccharides/*metabolism, Sulfolobus/*enzymology, Trehalose/*metabolism | Metabolism |
Enzymology | 9063974 | Purification and characterization of thermostable maltooligosyl trehalose trehalohydrolase from the thermoacidophilic archaebacterium Sulfolobus acidocaldarius. | Nakada T, Ikegami S, Chaen H, Kubota M, Fukuda S, Sugimoto T, Kurimoto M, Tsujisaka Y | Biosci Biotechnol Biochem | 10.1271/bbb.60.267 | 1996 | Chemical Phenomena, Chemistry, Physical, Glucosidases/chemistry/*isolation & purification/*metabolism, Kinetics, Substrate Specificity, Sulfolobus/*enzymology, Trehalose/metabolism | Metabolism |
Enzymology | 9169004 | Expression of the Solfolobus acidocaldarius Rieske iron sulfur protein II (SOXF) with the correctly inserted [2FE-2S] cluster in Escherichia coli. | Schmidt CL, Hatzfeld OM, Petersen A, Link TA, Schafer G | Biochem Biophys Res Commun | 10.1006/bbrc.1997.6599 | 1997 | Amino Acid Sequence, Circular Dichroism, DNA Primers, Electrochemistry, Electron Spin Resonance Spectroscopy, *Electron Transport Complex III, Electrophoresis, Polyacrylamide Gel, Escherichia coli/genetics, Gene Expression, Iron-Sulfur Proteins/*chemistry/genetics/isolation & purification, Molecular Sequence Data, Mutagenesis, Site-Directed, Mutation, Oxidation-Reduction, Recombinant Proteins/chemistry/isolation & purification, Sequence Deletion, Spectrophotometry, Sulfolobus acidocaldarius/*chemistry | Phylogeny |
Enzymology | 9287013 | A succinate dehydrogenase with novel structure and properties from the hyperthermophilic archaeon Sulfolobus acidocaldarius: genetic and biophysical characterization. | Janssen S, Schafer G, Anemuller S, Moll R | J Bacteriol | 10.1128/jb.179.17.5560-5569.1997 | 1997 | Amino Acid Sequence, Amino Acids/analysis, *Archaeal Proteins, Bacterial Proteins/genetics, Cloning, Molecular, Cysteine/genetics, Electron Spin Resonance Spectroscopy, Flavoproteins/genetics, Genes, Bacterial/*genetics, Iron-Sulfur Proteins/genetics, Membrane Proteins/chemistry/genetics, Molecular Sequence Data, Nerve Tissue Proteins/chemistry/genetics, Operon/genetics, Oxidation-Reduction, Protein Subunits, RNA, Bacterial/analysis, RNA, Messenger/analysis, Restriction Mapping, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Homology, Nucleic Acid, Succinate Dehydrogenase/chemistry/*genetics/metabolism, Sulfolobus acidocaldarius/*enzymology/*genetics, Transcription, Genetic/genetics | Genetics |
Metabolism | 9575144 | Cytochrome b558/566 from the archaeon Sulfolobus acidocaldarius. A novel highly glycosylated, membrane-bound b-type hemoprotein. | Hettmann T, Schmidt CL, Anemuller S, Zahringer U, Moll H, Petersen A, Schafer G | J Biol Chem | 10.1074/jbc.273.20.12032 | 1998 | Amino Acid Sequence, Base Sequence, Chromatography, Gas, Cytochrome b Group/*metabolism, DNA, Bacterial, Glycosylation, Hemeproteins/*metabolism, Membrane Proteins/*metabolism, Molecular Sequence Data, *NADPH Oxidases, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Sulfolobus acidocaldarius/*enzymology | Genetics |
Enzymology | 9785454 | A novel heat-stable lipolytic enzyme from Sulfolobus acidocaldarius DSM 639 displaying similarity to polyhydroxyalkanoate depolymerases. | Arpigny JL, Jendrossek D, Jaeger KE | FEMS Microbiol Lett | 10.1111/j.1574-6968.1998.tb13209.x | 1998 | Amino Acid Sequence, Carboxylic Ester Hydrolases/*genetics/metabolism, Cloning, Molecular, DNA, Archaeal/genetics, Enzyme Stability, Esterases/*genetics/metabolism, Genes, Archaeal, Hot Temperature, *Lipolysis, Molecular Sequence Data, Pseudomonas/enzymology/genetics, Sequence Homology, Amino Acid, Substrate Specificity, Sulfolobus acidocaldarius/*enzymology/*genetics | Metabolism |
Enzymology | 9865608 | The glutamine synthetase from the hyperthermoacidophilic crenarcheon Sulfolobus acidocaldarius: isolation, characterization and sequencing of the gene. | Yin Z, Purschke WG, Schafer G, Schmidt CL | Biol Chem | 10.1515/bchm.1998.379.11.1349 | 1998 | Amino Acid Sequence, Base Sequence, Catalysis, DNA, Bacterial, Enzyme Stability, Glutamate-Ammonia Ligase/genetics/*isolation & purification/metabolism, Kinetics, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid, Sulfolobus acidocaldarius/*enzymology | Phylogeny |
Enzymology | 10095793 | The strict molybdate-dependence of glucose-degradation by the thermoacidophile Sulfolobus acidocaldarius reveals the first crenarchaeotic molybdenum containing enzyme--an aldehyde oxidoreductase. | Kardinahl S, Schmidt CL, Hansen T, Anemuller S, Petersen A, Schafer G | Eur J Biochem | 10.1046/j.1432-1327.1999.00201.x | 1999 | Aldehyde Oxidoreductases/*metabolism, Anaerobiosis, Catalysis, *Coenzymes, Electron Spin Resonance Spectroscopy, Electrophoresis, Polyacrylamide Gel, Glucose/*metabolism, Metalloproteins/*metabolism, Molecular Weight, Molybdenum/*metabolism, Molybdenum Cofactors, Pteridines/*metabolism, Spectrometry, Fluorescence, Sulfolobus acidocaldarius/enzymology/*metabolism | Metabolism |
Enzymology | 10669803 | Cloning and nucleotide sequence of a gene encoding a glycogen debranching enzyme in the trehalose operon from Arthrobacter sp. Q36. | Maruta K, Kubota M, Fukuda S, Kurimoto M | Biochim Biophys Acta | 10.1016/s0167-4838(99)00253-8 | 2000 | Amino Acid Sequence, Arthrobacter/enzymology/*genetics, Base Sequence, Cloning, Molecular, Gene Expression Regulation, Bacterial, Genes, Bacterial, Glycogen/metabolism, Glycogen Debranching Enzyme System/*genetics/metabolism, Molecular Sequence Data, Operon | Metabolism |
Metabolism | 10771436 | Crystallization and preliminary crystallographic analysis of Rieske iron-sulfur protein II (soxF) from sulfolobus acidocaldarius. | Bonisch H, Schmidt CL, Schafer G, Ladenstein R | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444900002456 | 2000 | Crystallization, Crystallography, X-Ray/methods, *Electron Transport Complex III, Iron-Sulfur Proteins/*chemistry, Protein Conformation, Recombinant Proteins/chemistry, Software, Sulfolobus acidocaldarius/*metabolism | |
Cultivation | 10781574 | Sulfolobicins, specific proteinaceous toxins produced by strains of the extremely thermophilic archaeal genus Sulfolobus. | Prangishvili D, Holz I, Stieger E, Nickell S, Kristjansson JK, Zillig W | J Bacteriol | 10.1128/JB.182.10.2985-2988.2000 | 2000 | Culture Media, Endopeptidases/*metabolism, Molecular Weight, Sulfolobus/*enzymology, Toxins, Biological/*metabolism | Metabolism |
Enzymology | 10866817 | Cytochrome b558/566 from the archaeon Sulfolobus acidocaldarius has a unique Asn-linked highly branched hexasaccharide chain containing 6-sulfoquinovose. | Zahringer U, Moll H, Hettmann T, Knirel YA, Schafer G | Eur J Biochem | 10.1046/j.1432-1327.2000.01446.x | 2000 | Cytochrome b Group/*chemistry, Magnetic Resonance Spectroscopy, Methylglucosides/*chemistry, *NADPH Oxidases, Oligosaccharides/*chemistry, Sulfolobus acidocaldarius/*enzymology, Trypsin/pharmacology | |
Enzymology | 11517615 | [Cloning and expression of maltooligosyltrehalose synthase from Sulfolobus acidocaldarius in Escherichia coli]. | Wang H, Chen W, Wu J, Jin C | Sheng Wu Gong Cheng Xue Bao | 2001 | Cloning, Molecular, Electrophoresis, Polyacrylamide Gel, Escherichia coli/*genetics, Glucosyltransferases/*genetics/metabolism, Plasmids, Sulfolobus acidocaldarius/*enzymology | Metabolism | |
Phylogeny | 12887010 | New genes encoding subunits of a cytochrome bc1-analogous complex in the respiratory chain of the hyperthermoacidophilic crenarchaeon Sulfolobus acidocaldarius. | Hiller A, Henninger T, Schafer G, Schmidt CL | J Bioenerg Biomembr | 10.1023/a:1023742002493 | 2003 | Amino Acid Sequence, Bacterial Proteins/*chemistry/*genetics/metabolism, Electron Transport/genetics, Electron Transport Complex III/*chemistry/*genetics/metabolism, Gene Expression Regulation, Enzymologic/*genetics, Molecular Sequence Data, Phylogeny, Sequence Alignment/*methods, Sequence Analysis, Protein/methods, Sequence Homology, Amino Acid, Species Specificity, Sulfolobus acidocaldarius/*chemistry/*enzymology/genetics, Transcriptional Activation/genetics | Metabolism |
Genetics | 15168618 | Novel functional aspects of the membrane-bound exo-pyrophosphatase of the hyperthermoacidophilic archaeon Sulfolobus are provided by analysis of its gene and the adjacent gene cluster. | Moll RG, Schafer G | J Bioenerg Biomembr | 10.1023/b:jobb.0000019606.33529.4e | 2004 | Amino Acid Sequence, Archaea/enzymology/genetics, Cell Membrane/*enzymology, Gene Expression Profiling/*methods, Gene Expression Regulation, Archaeal/*physiology, Gene Expression Regulation, Enzymologic/*physiology, Genome, Archaeal, Membrane Proteins/chemistry/genetics/metabolism, Molecular Sequence Data, Multigene Family/genetics, Protein Conformation, Protein Structure, Secondary, Pyrophosphatases/*chemistry/genetics/*metabolism, Sequence Analysis, Protein/methods, Sequence Homology, Amino Acid, Structure-Activity Relationship, Sulfolobus/*enzymology/genetics | Enzymology |
Enzymology | 15606122 | Highly enantioselective sec-alkyl sulfatase activity of Sulfolobus acidocaldarius DSM 639. | Wallner SR, Nestl BM, Faber K | Org Lett | 10.1021/ol0477778 | 2004 | Enzyme Activation, Hydrolysis, Molecular Conformation, Stereoisomerism, Sulfatases/*chemistry, Sulfolobus acidocaldarius/*enzymology, Sulfuric Acid Esters/*chemistry | |
Genetics | 15995215 | The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. | Chen L, Brugger K, Skovgaard M, Redder P, She Q, Torarinsson E, Greve B, Awayez M, Zibat A, Klenk HP, Garrett RA | J Bacteriol | 10.1128/JB.187.14.4992-4999.2005 | 2005 | Base Sequence, Chromosome Mapping, DNA Replication/genetics, DNA, Archaeal/genetics, DNA, Circular/genetics, *Genome, Archaeal, Genome, Bacterial, Models, Genetic, Molecular Sequence Data, Restriction Mapping/methods, Sulfolobus acidocaldarius/classification/*genetics | Phylogeny |
Enzymology | 15999201 | Highly enantioselective stereo-inverting sec-alkylsulfatase activity of hyperthermophilic Archaea. | Wallner SR, Nestl BM, Faber K | Org Biomol Chem | 10.1039/b504883d | 2005 | Archaea/*enzymology, Molecular Conformation, Molecular Structure, Stereoisomerism, Sulfatases/*chemistry/metabolism, Temperature | Metabolism |
Biotechnology | 16545098 | Biocatalytic approaches for the quantitative production of single stereoisomers from racemates. | Gadler P, Glueck SM, Kroutil W, Nestl BM, Larissegger-Schnell B, Ueberbacher BT, Wallner SR, Faber K | Biochem Soc Trans | 10.1042/BST20060296 | 2006 | Animals, Biotechnology/*methods, Catalysis, Stereoisomerism, Substrate Specificity, Sulfatases/metabolism | Metabolism |
Genetics | 17498625 | Analysis of synonymous codon usage in Aeropyrum pernix K1 and other Crenarchaeota microorganisms. | Jiang P, Sun X, Lu Z | J Genet Genomics | 10.1016/S1673-8527(07)60029-0 | 2007 | Aeropyrum/*genetics, Codon/analysis/*genetics, Crenarchaeota/*genetics, Evolution, Molecular, Genes, Plant, Genetic Code/*genetics/physiology, Genome, Archaeal, Genome, Plant | |
Genetics | 18083856 | The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism. | Auernik KS, Maezato Y, Blum PH, Kelly RM | Appl Environ Microbiol | 10.1128/AEM.02019-07 | 2007 | Amino Acid Sequence, Archaeal Proteins/genetics/*metabolism, Gene Expression Regulation, Archaeal, *Genome, Archaeal, *Hot Temperature, Iron/*metabolism, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Oxidation-Reduction, *Sequence Analysis, DNA, Sulfates/*metabolism, *Sulfolobaceae/classification/genetics/metabolism | Metabolism |
Enzymology | 20049620 | Biochemical characterization of a recombinant short-chain NAD(H)-dependent dehydrogenase/reductase from Sulfolobus acidocaldarius. | Pennacchio A, Giordano A, Pucci B, Rossi M, Raia CA | Extremophiles | 10.1007/s00792-009-0298-3 | 2010 | Alcohol Oxidoreductases/*chemistry/genetics/metabolism, Archaeal Proteins/*chemistry/genetics/metabolism, Base Sequence, Cloning, Molecular, DNA Primers/genetics, DNA, Archaeal/genetics, Enzyme Stability, Escherichia coli/genetics, Genes, Archaeal, Hydrogen-Ion Concentration, Kinetics, NAD/metabolism, Protein Subunits, Recombinant Proteins/chemistry/genetics/metabolism, Substrate Specificity, Sulfolobus acidocaldarius/*enzymology/genetics, Thermodynamics | Metabolism |
22707949 | Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius. | Wagner M, van Wolferen M, Wagner A, Lassak K, Meyer BH, Reimann J, Albers SV | Front Microbiol | 10.3389/fmicb.2012.00214 | 2012 | |||
Enzymology | 22805786 | Biochemical and structural characterization of recombinant short-chain NAD(H)-dependent dehydrogenase/reductase from Sulfolobus acidocaldarius highly enantioselective on diaryl diketone benzil. | Pennacchio A, Sannino V, Sorrentino G, Rossi M, Raia CA, Esposito L | Appl Microbiol Biotechnol | 10.1007/s00253-012-4273-z | 2012 | Amino Acid Sequence, Archaeal Proteins/*chemistry/genetics/*metabolism, Benzoin/metabolism, Enzyme Stability, Fatty Acid Synthases/*chemistry/genetics/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, NADH, NADPH Oxidoreductases/*chemistry/genetics/*metabolism, Phenylglyoxal/*analogs & derivatives/metabolism, Sequence Homology, Amino Acid, Stereoisomerism, Substrate Specificity, Sulfolobus acidocaldarius/*enzymology | Metabolism |
Metabolism | 23396915 | Identification and characterization of MalA in the maltose/maltodextrin operon of Sulfolobus acidocaldarius DSM639. | Choi KH, Hwang S, Cha J | J Bacteriol | 10.1128/JB.01713-12 | 2013 | Archaeal Proteins/genetics/*metabolism, Gene Expression Regulation, Archaeal/physiology, Gene Expression Regulation, Enzymologic/physiology, Kinetics, Maltose/*metabolism, Multigene Family, Operon/*physiology, Plasmids, Polysaccharides/*metabolism, RNA, Archaeal/genetics/metabolism, Starch/metabolism, Substrate Specificity, Sulfolobus acidocaldarius/enzymology/genetics/*metabolism, Transformation, Genetic, alpha-Glucosidases/genetics/*metabolism | Enzymology |
Metabolism | 26104674 | Membrane-bound amylopullulanase is essential for starch metabolism of Sulfolobus acidocaldarius DSM639. | Choi KH, Cha J | Extremophiles | 10.1007/s00792-015-0766-x | 2015 | Amino Acid Sequence, Archaeal Proteins/chemistry/genetics/*metabolism, Glycoside Hydrolases/chemistry/genetics/*metabolism, Molecular Sequence Data, Starch/*metabolism, Sulfolobus acidocaldarius/*enzymology/genetics/metabolism | Genetics |
Metabolism | 30315522 | Profiling of glucose-induced transcription in Sulfolobus acidocaldarius DSM 639. | Park J, Lee A, Lee HH, Park I, Seo YS, Cha J | Genes Genomics | 10.1007/s13258-018-0675-3 | 2018 | Amino Acids/metabolism, Carbon/metabolism, Gene Expression Profiling, Glucose/*metabolism, Sequence Analysis, RNA, Sulfolobus acidocaldarius/*genetics/growth & development/metabolism, Sulfur/metabolism, Up-Regulation | Transcriptome |
Metabolism | 31153897 | A defined cultivation medium for Sulfolobus acidocaldarius. | Quehenberger J, Albersmeier A, Glatzel H, Hackl M, Kalinowski J, Spadiut O | J Biotechnol | 10.1016/j.jbiotec.2019.04.028 | 2019 | Citric Acid/metabolism, *Culture Media/chemistry/metabolism/pharmacology, Edetic Acid/metabolism, Glutamic Acid/metabolism, Hydrogen-Ion Concentration, *Sulfolobus acidocaldarius/drug effects/metabolism | Cultivation |
Metabolism | 31188531 | Determinants of sulphur chemolithoautotrophy in the extremely thermoacidophilic Sulfolobales. | Zeldes BM, Loder AJ, Counts JA, Haque M, Widney KA, Keller LM, Albers SV, Kelly RM | Environ Microbiol | 10.1111/1462-2920.14712 | 2019 | Autotrophic Processes, *Chemoautotrophic Growth, Oxidation-Reduction, Oxidoreductases/metabolism, Sulfolobales/*metabolism, Sulfur/*metabolism, Thiosulfates/metabolism | Enzymology |
Metabolism | 31696620 | Energy flux controls tetraether lipid cyclization in Sulfolobus acidocaldarius. | Zhou A, Weber Y, Chiu BK, Elling FJ, Cobban AB, Pearson A, Leavitt WD | Environ Microbiol | 10.1111/1462-2920.14851 | 2019 | Cell Membrane/chemistry/*metabolism, Cyclization, Energy Metabolism/physiology, Membrane Lipids/*metabolism, Sulfolobus acidocaldarius/chemistry/*metabolism, Temperature | Lipids |
Metabolism | 32783317 | Multiple environmental parameters impact lipid cyclization in Sulfolobus acidocaldarius. | Cobban A, Zhang Y, Zhou A, Weber Y, Elling FJ, Pearson A, Leavitt WD | Environ Microbiol | 10.1111/1462-2920.15194 | 2020 | Cyclization, Energy Metabolism, Glyceryl Ethers/chemistry/metabolism, Hydrogen-Ion Concentration, Membrane Lipids/*chemistry/metabolism, Oxidation-Reduction, Sulfolobus acidocaldarius/*chemistry/growth & development/metabolism, Temperature | Lipids |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
341 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 639) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-639 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
85670 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47247.1 | StrainInfo: A central database for resolving microbial strain identifiers |