Strain identifier

BacDive ID: 166451

Type strain: Yes

Species: Enterobacter chuandaensis

Strain Designation: GDMCC1.1427, 90028

NCBI tax ID(s): 2497875 (species)

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General

@ref: 67815

BacDive-ID: 166451

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, colony-forming

description: Enterobacter chuandaensis GDMCC1.1427 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from blood of a patient.

NCBI tax id

  • NCBI tax id: 2497875
  • Matching level: species

doi: 10.13145/bacdive166451.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter chuandaensis
  • full scientific name: Enterobacter chuandaensis Wu et al. 2019

@ref: 67815

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter chuandaensis

strain designation: GDMCC1.1427, 90028

type strain: yes

Morphology

cell morphology

  • @ref: 67815
  • gram stain: negative
  • motility: yes

colony morphology

  • @ref: 67815
  • colony color: white
  • colony shape: circular
  • incubation period: 1 day
  • medium used: Nutrient agar (NA)

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
67815positivegrowth4-42
67815positiveoptimum35mesophilic
67815positiveoptimum37mesophilic
67815nogrowth45-50thermophilic

culture pH

@refabilitytypepHPH range
67815positivegrowth5-10alkaliphile
67815positiveoptimum6-7

Physiology and metabolism

oxygen tolerance

  • @ref: 67815
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 67815
  • spore formation: no

halophily

  • @ref: 67815
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-8 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6781516947citrate+assimilation
67815esculin ferric citrate+builds acid from
6781565327D-xylose+builds acid from
6781516988D-ribose+builds acid from
6781530849L-arabinose+builds acid from
6781517634D-glucose+builds acid from
6781517306maltose+builds acid from
6781527082trehalose+builds acid from
6781512936D-galactose+builds acid from
6781515824D-fructose+builds acid from
6781517992sucrose+builds acid from
6781517057cellobiose+builds acid from
6781518305arbutin+builds acid from
6781516024D-mannose+builds acid from
6781517814salicin+builds acid from
6781517716lactose+builds acid from
6781516899D-mannitol+builds acid from
6781562345L-rhamnose+builds acid from
6781528066gentiobiose+builds acid from
6781517924D-sorbitol+builds acid from
6781517754glycerol+builds acid from
6781559640N-acetylglucosamine+builds acid from
67815320061methyl alpha-D-glucopyranoside+builds acid from
6781532032potassium gluconate+builds acid from
6781516634raffinose+builds acid from
6781515963ribitol+builds acid from
67815potassium 5-dehydro-D-gluconate-builds acid from
6781516443D-tagatose-builds acid from
67815potassium 2-dehydro-D-gluconate-builds acid from
6781532528turanose-builds acid from
6781528053melibiose-builds acid from
6781528087glycogen-builds acid from
6781528017starch-builds acid from
6781517108D-arabinose-builds acid from
678156731melezitose-builds acid from
6781518287L-fucose-builds acid from
6781518333D-arabitol-builds acid from
6781562318D-lyxose-builds acid from
6781528847D-fucose-builds acid from
6781517268myo-inositol-builds acid from
6781574863methyl beta-D-xylopyranoside-builds acid from
6781527613amygdalin-builds acid from
6781543943methyl alpha-D-mannoside-builds acid from
6781517113erythritol-builds acid from
6781565328L-xylose-builds acid from
6781517266L-sorbose-builds acid from
6781516813galactitol-builds acid from
6781515443inulin-builds acid from
6781517151xylitol-builds acid from
6781518403L-arabitol-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.group ID
6781528971ampicillinyesyes32 µg/mL
678152637amikacinyesyes2 µg/mL
67815161680aztreonamyesyes1 µg/mL
67815474053cefazolinyesyes64 µg/mL
67815478164cefepimeyesyes1 µg/mL
67815204928cefotaximeyesyes1 µg/mL
678153499cefotetanyesyes4 µg/mL
678153508ceftazidimeyesyes1 µg/mL
6781529007ceftriaxoneyesyes1 µg/mL
678153515cefuroximeyesyes4 µg/mL
678153542cephalothinyesyes64 µg/mL
67815100241ciprofloxacinyesyes0.25 µg/mL
67815135928doripenemyesyes0.12 µg/mL
67815404903ertapenemyesyes0.5 µg/mL
6781517833gentamicinyesyes1 µg/mL
67815471744imipenemyesyes0.5 µg/mL
6781563598levofloxacinyesyes0.12 µg/mL
6781543968meropenemyesyes0.25 µg/mL
6781563611moxifloxacinyesyes0.25 µg/mL
67815100147nalidixic acidyesyes4 µg/mL
67815100246norfloxacinyesyes0.5 µg/mL
678158232piperacillinyesyes4 µg/mL
6781527902tetracyclineyesyes1 µg/mL
678159587ticarcillinyesyes8 µg/mL
67815149836tigecyclineyesyes1 µg/mL
6781528864tobramycinyesyes1 µg/mL
6781545924trimethoprimyesyes1 µg/mL26
678159332sulfamethoxazoleyesyes19 µg/mL26

metabolite production

@refChebi-IDmetaboliteproduction
6781535581indoleno
6781515688acetoinyes
6781516136hydrogen sulfideno

metabolite tests

  • @ref: 67815
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
67815catalase+1.11.1.6
67815beta-galactosidase+3.2.1.23
67815arginine dihydrolase+3.5.3.6
67815cytochrome oxidase-1.9.3.1
67815lysine decarboxylase-4.1.1.18
67815ornithine decarboxylase-4.1.1.17
67815gelatinase-
67815urease-3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 67815
  • sample type: blood of a patient
  • sampling date: 2017
  • geographic location: West China Hospital of Sichuan University in Chengdu, Sichuan
  • country: China
  • origin.country: CHN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_66.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_66&stattab=map
  • Last taxonomy: Enterobacterales
  • 16S sequence: MK049966
  • Sequence Identity:
  • Total samples: 14221
  • soil counts: 575
  • aquatic counts: 888
  • animal counts: 11838
  • plant counts: 920

Sequence information

16S sequences

  • @ref: 67815
  • description: Enterobacter chuandaensis strain 090028 16S ribosomal RNA gene, partial sequence
  • accession: MK049966
  • length: 1528
  • database: ena
  • NCBI tax ID: 2497875

Genome sequences

  • @ref: 67815
  • description: Enterobacter chuandaensis 090028
  • accession: GCA_003594915
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2497875

GC content

  • @ref: 67815
  • GC-content: 55.68
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.28yes
flagellatedno56.872no
gram-positiveno97.804no
anaerobicno96.977yes
aerobicyes77.783yes
halophileno89.126no
spore-formingno92.858yes
thermophileno99.564no
glucose-utilyes95.692no
glucose-fermentyes94.338no

External links

@ref: 67815

culture collection no.: CCTCC AB 2018173, CNCTC 7649

literature

  • topic: Phylogeny
  • Pubmed-ID: 30614784
  • title: Enterobacter huaxiensis sp. nov. and Enterobacter chuandaensis sp. nov., recovered from human blood.
  • authors: Wu W, Wei L, Feng Y, Kang M, Zong Z
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003207
  • year: 2019
  • mesh: Bacterial Typing Techniques, Base Composition, Blood/*microbiology, China, DNA, Bacterial/genetics, Enterobacter/*classification/isolation & purification, Fatty Acids/chemistry, Genes, Bacterial, Humans, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67815Wenjing Wu, Li Wei, Yu Feng, Mei Kang, Zhiyong ZongEnterobacter huaxiensis sp. nov. and Enterobacter chuandaensis sp. nov., recovered from human blood10.1099/ijsem.0.003207IJSEM 69: 708-714 2019
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/