Strain identifier
BacDive ID: 16644
Type strain: 
Species: Acidianus sulfidivorans
Strain Designation: JP7
Strain history: J. Plumb JP7.
NCBI tax ID(s): 619593 (strain), 312539 (species)
version 8.1 (current version)
General
@ref: 7697
BacDive-ID: 16644
DSM-Number: 18786
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Acidianus sulfidivorans JP7 is a thermophilic archaeon that was isolated from sulfur-rich acidic edge of a solfataric hot spring.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 619593 | strain |
| 312539 | species |
strain history
| @ref | history |
|---|---|
| 7697 | <- J. J. Plumb, Centre for Environment and Life Sciences, CSIRO Land and Water, Wembley, Australia; JP7 <- J. J. Plumb {2002} |
| 67770 | J. Plumb JP7. |
doi: 10.13145/bacdive16644.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Sulfolobales
- family: Sulfolobaceae
- genus: Acidianus
- species: Acidianus sulfidivorans
- full scientific name: Acidianus sulfidivorans Plumb et al. 2007
@ref: 7697
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Sulfolobales
family: Sulfolobaceae
genus: Acidianus
species: Acidianus sulfidivorans
full scientific name: Acidianus sulfidivorans Plumb et al. 2007
strain designation: JP7
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7697
- name: SULFOLOBUS MEDIUM (DSMZ Medium 88)
- growth: yes
- link: https://mediadive.dsmz.de/medium/88
- composition: Name: SULFOLOBUS MEDIUM (DSMZ Medium 88; with strain-specific modifications) Composition: None 9.90099 g/l (NH4)2SO4 1.28713 g/l KH2PO4 0.277228 g/l MgSO4 x 7 H2O 0.247525 g/l Yeast extract 0.0990099 g/l CaCl2 x 2 H2O 0.0693069 g/l FeCl3 x 6 H2O 0.019802 g/l Na2B4O7 x 10 H2O 0.00445545 g/l MnCl2 x 4 H2O 0.00178218 g/l ZnSO4 x 7 H2O 0.000217822 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Na2MoO4 x 2 H2O 2.9703e-05 g/l VOSO4 x 2 H2O 2.9703e-05 g/l CoSO4 x 7 H2O 9.90099e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7697 | positive | growth | 70 | thermophilic |
| 67770 | positive | growth | 70 | thermophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7697 | sulfur-rich acidic edge of a solfataric hot spring | Lihir Island | Papua New Guinea | PNG | Australia and Oceania |
| 67770 | Solfatara on Lihir Island | Papua New Guinea | PNG | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Acidic | |
| #Condition | #Sulfuric | |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_193665.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17950;96_70391;97_92804;98_126218;99_193665&stattab=map
- Last taxonomy: Acidianus sulfidivorans subclade
- 16S sequence: AY907891
- Sequence Identity:
- Total samples: 10
- aquatic counts: 10
Safety information
risk assessment
- @ref: 7697
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7697
- description: Acidianus sulfidivorans JP7 16S ribosomal RNA gene, partial sequence
- accession: AY907891
- length: 1473
- database: ena
- NCBI tax ID: 619593
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acidianus sulfidivorans JP7 | GCA_003201765 | complete | ncbi | 619593 |
| 66792 | Acidianus sulfidivorans JP7 | 619593.4 | complete | patric | 619593 |
GC content
- @ref: 7697
- GC-content: 31.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.967 | no |
| flagellated | no | 96.967 | no |
| gram-positive | no | 95.341 | no |
| gram-positive | no | 95.341 | no |
| anaerobic | yes | 90.758 | no |
| anaerobic | yes | 90.758 | no |
| halophile | no | 74.887 | no |
| halophile | no | 74.887 | no |
| spore-forming | no | 96.799 | no |
| spore-forming | no | 96.799 | no |
| glucose-util | yes | 85.629 | no |
| glucose-util | yes | 85.629 | no |
| aerobic | no | 87.951 | no |
| aerobic | no | 87.951 | no |
| thermophile | yes | 100 | no |
| thermophile | yes | 100 | no |
| motile | no | 78.798 | no |
| motile | no | 78.798 | no |
| glucose-ferment | no | 74.725 | no |
| glucose-ferment | no | 74.725 | no |
External links
@ref: 7697
culture collection no.: DSM 18786, JCM 13667
straininfo link
- @ref: 85665
- straininfo: 309414
literature
- topic: Phylogeny
- Pubmed-ID: 17625168
- title: Acidianus sulfidivorans sp. nov., an extremely acidophilic, thermophilic archaeon isolated from a solfatara on Lihir Island, Papua New Guinea, and emendation of the genus description.
- authors: Plumb JJ, Haddad CM, Gibson JAE, Franzmann PD
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64846-0
- year: 2007
- mesh: Acidianus/*classification/genetics/*isolation & purification/metabolism, Aerobiosis, Base Composition, Cell Membrane/chemistry, DNA, Archaeal/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Ferric Compounds/metabolism, Ferrous Compounds/metabolism, Genes, rRNA, Hydrogen/metabolism, Hydrogen-Ion Concentration, Lipids/analysis, Locomotion, Molecular Sequence Data, Oxidation-Reduction, Papua New Guinea, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, *Soil Microbiology, Sulfides/metabolism, Sulfur/metabolism, Temperature
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7697 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18786) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18786 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 85665 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309414.1 | StrainInfo: A central database for resolving microbial strain identifiers |