Strain identifier

BacDive ID: 166076

Type strain: No

Species: Rhodococcus erythropolis

Strain history: T. Kudo TA431.

NCBI tax ID(s): 1298616 (strain), 1833 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 166076

keywords: genome sequence, 16S sequence, mesophilic, Gram-positive

description: Rhodococcus erythropolis JCM 9805 is a mesophilic, Gram-positive prokaryote that was isolated from Gut homogenate of the wood-feeding termite Reticulitermes speratus.

NCBI tax id

NCBI tax idMatching level
1833species
1298616strain

strain history

  • @ref: 67770
  • history: T. Kudo TA431.

doi: 10.13145/bacdive166076.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus erythropolis
  • full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Mycobacterium erythropolis
    20215Rhodococcus qingshengii
    20215Rhodococcus baikonurensis
    20215Rhodococcus jialingiae
    20215Rhodococcus enclensis
    20215Rhodococcus degradans

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus erythropolis

full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.974

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Gut homogenate of the wood-feeding termite Reticulitermes speratus
  • host species: Reticulitermes speratus

Sequence information

16S sequences

  • @ref: 67770
  • description: Rhodococcus erythropolis DNA for 16S rRNA, partial sequence
  • accession: D87089
  • length: 891
  • database: ena
  • NCBI tax ID: 1833

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rhodococcus erythropolis JCM 98051298616.3wgspatric1298616
66792Rhodococcus erythropolis JCM 98052681813030draftimg1298616
67770Rhodococcus erythropolis JCM 9805GCA_001312745contigncbi1298616

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno77no
motileno93.03no
gram-positiveyes83.149no
anaerobicno99.209no
aerobicyes91.466no
halophileno93.614no
spore-formingno73.352no
thermophileno99.602yes
glucose-utilyes88.981no
flagellatedno98.189no
glucose-fermentno89.453no

External links

@ref: 67770

culture collection no.: JCM 9805

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes