Strain identifier
BacDive ID: 166076
Type strain: 
Species: Rhodococcus erythropolis
Strain history: T. Kudo TA431.
NCBI tax ID(s): 1298616 (strain), 1833 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 166076
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Rhodococcus erythropolis JCM 9805 is a mesophilic bacterium that was isolated from Gut homogenate of the wood-feeding termite Reticulitermes speratus.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1298616 | strain |
| 1833 | species |
strain history
- @ref: 67770
- history: T. Kudo TA431.
doi: 10.13145/bacdive166076.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Rhodococcus
- species: Rhodococcus erythropolis
- full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)
synonyms
@ref synonym 20215 Rhodococcus jialingiae 20215 Rhodococcus enclensis 20215 Rhodococcus degradans 20215 Mycobacterium erythropolis 20215 Rhodococcus qingshengii 20215 Rhodococcus baikonurensis
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus erythropolis
full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979
type strain: no
Morphology
cell morphology
- @ref: 125438
- motility: no
- confidence: 92.5
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.1
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Gut homogenate of the wood-feeding termite Reticulitermes speratus
- host species: Reticulitermes speratus
Sequence information
16S sequences
- @ref: 67770
- description: Rhodococcus erythropolis DNA for 16S rRNA, partial sequence
- accession: D87089
- length: 891
- database: nuccore
- NCBI tax ID: 1833
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodococcus erythropolis JCM 9805 | 1298616.3 | wgs | patric | 1298616 |
| 66792 | Rhodococcus erythropolis JCM 9805 | 2681813030 | draft | img | 1298616 |
| 67770 | Rhodococcus erythropolis JCM 9805 | GCA_001312745 | contig | ncbi | 1298616 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.394 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.617 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 56.338 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 83.36 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 92.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 87.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 63 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 85.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.1 |
External links
@ref: 67770
culture collection no.: JCM 9805
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |