Strain identifier
BacDive ID: 166076
Type strain:
Species: Rhodococcus erythropolis
Strain history: T. Kudo TA431.
NCBI tax ID(s): 1298616 (strain), 1833 (species)
General
@ref: 67770
BacDive-ID: 166076
keywords: genome sequence, 16S sequence, mesophilic, Gram-positive
description: Rhodococcus erythropolis JCM 9805 is a mesophilic, Gram-positive prokaryote that was isolated from Gut homogenate of the wood-feeding termite Reticulitermes speratus.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1833 | species |
1298616 | strain |
strain history
- @ref: 67770
- history: T. Kudo TA431.
doi: 10.13145/bacdive166076.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus erythropolis
- full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium erythropolis 20215 Rhodococcus qingshengii 20215 Rhodococcus baikonurensis 20215 Rhodococcus jialingiae 20215 Rhodococcus enclensis 20215 Rhodococcus degradans
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus erythropolis
full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.974
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Gut homogenate of the wood-feeding termite Reticulitermes speratus
- host species: Reticulitermes speratus
Sequence information
16S sequences
- @ref: 67770
- description: Rhodococcus erythropolis DNA for 16S rRNA, partial sequence
- accession: D87089
- length: 891
- database: ena
- NCBI tax ID: 1833
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Rhodococcus erythropolis JCM 9805 | 1298616.3 | wgs | patric | 1298616 |
66792 | Rhodococcus erythropolis JCM 9805 | 2681813030 | draft | img | 1298616 |
67770 | Rhodococcus erythropolis JCM 9805 | GCA_001312745 | contig | ncbi | 1298616 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 77 | no |
motile | no | 93.03 | no |
gram-positive | yes | 83.149 | no |
anaerobic | no | 99.209 | no |
aerobic | yes | 91.466 | no |
halophile | no | 93.614 | no |
spore-forming | no | 73.352 | no |
thermophile | no | 99.602 | yes |
glucose-util | yes | 88.981 | no |
flagellated | no | 98.189 | no |
glucose-ferment | no | 89.453 | no |
External links
@ref: 67770
culture collection no.: JCM 9805
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |