Strain identifier
BacDive ID: 166075
Type strain: 
Species: Rhodococcus erythropolis
Strain history: T. Kudo TA422.
NCBI tax ID(s): 1302251 (strain), 1833 (species)
General
@ref: 67770
BacDive-ID: 166075
keywords: genome sequence, mesophilic, Gram-positive
description: Rhodococcus erythropolis JCM 9804 is a mesophilic, Gram-positive prokaryote that was isolated from Gut homogenate of the wood-feeding termite Reticulitermes speratus.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1833 | species |
| 1302251 | strain |
strain history
- @ref: 67770
- history: T. Kudo TA422.
doi: 10.13145/bacdive166075.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus erythropolis
- full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)
synonyms
@ref synonym 20215 Mycobacterium erythropolis 20215 Rhodococcus qingshengii 20215 Rhodococcus baikonurensis 20215 Rhodococcus jialingiae 20215 Rhodococcus enclensis 20215 Rhodococcus degradans
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus erythropolis
full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 91.852 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.418
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Gut homogenate of the wood-feeding termite Reticulitermes speratus
- host species: Reticulitermes speratus
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodococcus erythropolis JCM 9804 | 1302251.3 | wgs | patric | 1302251 |
| 66792 | Rhodococcus erythropolis JCM 9804 | 2681813029 | draft | img | 1302251 |
| 67770 | Rhodococcus erythropolis JCM 9804 | GCA_001313245 | contig | ncbi | 1302251 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 84 | no |
| motile | no | 91.588 | no |
| gram-positive | yes | 81.966 | no |
| anaerobic | no | 99.072 | no |
| halophile | no | 88.423 | no |
| spore-forming | no | 70.72 | no |
| thermophile | no | 99.372 | no |
| glucose-util | yes | 89.645 | no |
| aerobic | yes | 89.314 | no |
| flagellated | no | 98.126 | no |
| glucose-ferment | no | 90.528 | no |
External links
@ref: 67770
culture collection no.: JCM 9804
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |