Strain identifier

BacDive ID: 16573

Type strain: Yes

Species: Nonomuraea jabiensis

Strain Designation: A4036

Culture col. no.: DSM 45507, KCTC 19870

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 17454

BacDive-ID: 16573

DSM-Number: 45507

keywords: spore-forming, aerobe, Bacteria, 16S sequence, genome sequence, mesophilic, gram-positive, spiral-shaped

description: Nonomuraea jabiensis A4036 is an aerobe, spore-forming, mesophilic bacterium that was isolated from arid soil.

strain history: <- N. Sahin. Ondokuz Mayis University; A4036

doi: 10.13145/bacdive16573.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea jabiensis
  • full scientific name: Nonomuraea jabiensis Camas et al. 2013

@ref: 17454

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea jabiensis

full scientific name: Nonomuraea jabiensis Camas et al. 2013

strain designation: A4036

type strain: yes

Morphology

cell morphology

  • @ref: 30589
  • gram stain: positive
  • cell shape: spiral-shaped
  • motility: no

pigmentation

  • @ref: 30589
  • production: no

Culture and growth conditions

culture medium

  • @ref: 17454
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

@refgrowthtypetemperaturerange
17454positivegrowth28mesophilic
30589positivegrowth20-37
30589positiveoptimum28mesophilic

culture pH

@refabilitytypepH
30589positivegrowth05-10
30589positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30589
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30589
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
30589NaClpositivegrowth0-2 %
30589NaClpositiveoptimum1 %

observation

  • @ref: 30589
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3058915963ribitol+carbon source
3058916449alanine+carbon source
3058923652dextrin+carbon source
3058928757fructose+carbon source
3058927570histidine+carbon source
30589182404-hydroxy-L-proline+carbon source
3058917716lactose+carbon source
3058925017leucine+carbon source
3058917306maltose+carbon source
3058929864mannitol+carbon source
3058937684mannose+carbon source
3058928053melibiose+carbon source
3058928044phenylalanine+carbon source
3058926271proline+carbon source
3058926546rhamnose+carbon source
3058917822serine+carbon source
3058930031succinate+carbon source
3058917992sucrose+carbon source
3058926986threonine+carbon source
3058918222xylose+carbon source
305894853esculin+hydrolysis
3058917632nitrate+reduction

enzymes

  • @ref: 30589
  • value: urease
  • activity: +
  • ec: 3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 17454
  • sample type: arid soil
  • geographic location: Habuje, Jabi region
  • country: Nigeria
  • origin.country: NGA
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Climate#Hot#Arid

Safety information

risk assessment

  • @ref: 17454
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17454
  • description: Nonomuraea jabiensis strain A4036 16S ribosomal RNA gene, partial sequence
  • accession: HQ157186
  • length: 1485
  • database: ena
  • NCBI tax ID: 882448

Genome sequences

  • @ref: 66792
  • description: Nonomuraea jabiensis DSM 45507
  • accession: 2870526370
  • assembly level: permanent
  • database: img
  • NCBI tax ID: 882448

GC content

@refGC-contentmethod
1745469.6fluorimetric
3058969.6

External links

@ref: 17454

culture collection no.: DSM 45507, KCTC 19870

straininfo link

@refpassport
20218http://www.straininfo.net/strains/884211
20218http://www.straininfo.net/strains/884212

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17454Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45507)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45507
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2692010.1099/ijs.0.039362-0
30589Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26920
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)