Strain identifier

BacDive ID: 16572

Type strain: Yes

Species: Nonomuraea soli

Culture col. no.: DSM 45533, JCM 17347, YIM 120770

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17533

BacDive-ID: 16572

DSM-Number: 45533

keywords: spore-forming, Bacteria, 16S sequence, genome sequence, mesophilic

description: Nonomuraea soli DSM 45533 is a spore-forming, mesophilic bacterium that was isolated from soil.

strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 120770 <- Y.-R. Cao

doi: 10.13145/bacdive16572.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea soli
  • full scientific name: Nonomuraea soli Cao et al. 2012

@ref: 17533

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea soli

full scientific name: Nonomuraea soli Cao et al. 2012

type strain: yes

Morphology

pigmentation

  • @ref: 30383
  • production: no

Culture and growth conditions

culture medium

  • @ref: 17533
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

@refgrowthtypetemperaturerange
17533positivegrowth28mesophilic
30383positivegrowth15-37
30383positiveoptimum28mesophilic

culture pH

@refabilitytypepH
30383positivegrowth07-08
30383positiveoptimum7

Physiology and metabolism

spore formation

  • @ref: 30383
  • spore formation: yes

halophily

  • @ref: 30383
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3038317234glucose+carbon source
3038317754glycerol+carbon source
3038317306maltose+carbon source
3038329864mannitol+carbon source
3038337684mannose+carbon source
3038316634raffinose+carbon source
3038326546rhamnose+carbon source
3038330911sorbitol+carbon source
3038330031succinate+carbon source
3038317151xylitol+carbon source
3038318222xylose+carbon source
3038317632nitrate+reduction

enzymes

@refvalueactivityec
30383catalase+1.11.1.6
30383cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 17533
  • sample type: soil
  • geographic location: Yunnan, Weibao Mountain
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 17533
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17533
  • description: Nonomuraea soli strain YIM 120770 16S ribosomal RNA gene, partial sequence
  • accession: JF742631
  • length: 1524
  • database: ena
  • NCBI tax ID: 1032476

Genome sequences

  • @ref: 66792
  • description: Nonomuraea soli DSM 45533
  • accession: 2861178129
  • assembly level: permanent
  • database: img
  • NCBI tax ID: 1032476

GC content

@refGC-contentmethod
1753366.4high performance liquid chromatography (HPLC)
3038366.4

External links

@ref: 17533

culture collection no.: DSM 45533, JCM 17347, YIM 120770

straininfo link

@refpassport
20218http://www.straininfo.net/strains/872073
20218http://www.straininfo.net/strains/872563

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17533Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45533)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45533
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2672210.1099/ijs.0.034751-0
30383Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26722
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)