Strain identifier

BacDive ID: 16571

Type strain: Yes

Species: Nonomuraea jiangxiensis

Strain Designation: FXJ1.102

Culture col. no.: DSM 45780, CGMCC 4.6533, NBRC 106679

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18198

BacDive-ID: 16571

DSM-Number: 45780

keywords: spore-forming, Bacteria, 16S sequence, genome sequence, mesophilic

description: Nonomuraea jiangxiensis FXJ1.102 is a spore-forming, mesophilic bacterium that was isolated from soil.

strain history: <- J. Nakagawa, NBRC; NBRC 106679

doi: 10.13145/bacdive16571.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea jiangxiensis
  • full scientific name: Nonomuraea jiangxiensis Li et al. 2012

@ref: 18198

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea jiangxiensis

full scientific name: Nonomuraea jiangxiensis Li et al. 2012 emend. Nouioui et al. 2018

strain designation: FXJ1.102

type strain: yes

Morphology

cell morphology

  • @ref: 30370
  • motility: no

pigmentation

  • @ref: 30370
  • production: no

Culture and growth conditions

culture medium

  • @ref: 18198
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

@refgrowthtypetemperaturerange
18198positivegrowth28mesophilic
30370positivegrowth20-45
30370positiveoptimum30mesophilic

culture pH

@refabilitytypepH
30370positivegrowth05-09
30370positiveoptimum6

Physiology and metabolism

spore formation

  • @ref: 30370
  • spore formation: yes

halophily

  • @ref: 30370
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <6 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3037015963ribitol+carbon source
3037022599arabinose+carbon source
3037017057cellobiose+carbon source
3037023652dextrin+carbon source
3037028260galactose+carbon source
3037017234glucose+carbon source
3037017754glycerol+carbon source
3037017716lactose+carbon source
3037017306maltose+carbon source
3037029864mannitol+carbon source
3037037684mannose+carbon source
3037028053melibiose+carbon source
3037016634raffinose+carbon source
3037026546rhamnose+carbon source
3037017814salicin+carbon source
303704853esculin+hydrolysis
3037017632nitrate+reduction

enzymes

  • @ref: 30370
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 18198
  • sample type: soil
  • geographic location: Jiangxi Province, Nanchang City
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 18198
  • description: Nonomuraea jiangxiensis strain FXJ1.102 16S ribosomal RNA gene, partial sequence
  • accession: FJ418910
  • length: 1486
  • database: ena
  • NCBI tax ID: 633440

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonomuraea jiangxiensis CGMCC 4.6533GCA_900099965scaffoldncbi633440
66792Nonomuraea jiangxiensis strain CGMCC 4.6533633440.3wgspatric633440
66792Nonomuraea jiangxiensis CGMCC 4.65332675903065permanentimg633440

GC content

  • @ref: 18198
  • GC-content: 72.6

External links

@ref: 18198

culture collection no.: DSM 45780, CGMCC 4.6533, NBRC 106679

straininfo link

@refpassport
20218http://www.straininfo.net/strains/871665
20218http://www.straininfo.net/strains/871666

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18198Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45780)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45780
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2671010.1099/ijs.0.034520-0
30370Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26710
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)