Strain identifier

BacDive ID: 16571

Type strain: Yes

Species: Nonomuraea jiangxiensis

Strain Designation: FXJ1.102

Strain history: CGMCC 4.6533 <-- Y. Huang FXJ1.102.

NCBI tax ID(s): 633440 (species)

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General

@ref: 18198

BacDive-ID: 16571

DSM-Number: 45780

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Nonomuraea jiangxiensis FXJ1.102 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 633440
  • Matching level: species

strain history

@refhistory
18198<- J. Nakagawa, NBRC; NBRC 106679
67770CGMCC 4.6533 <-- Y. Huang FXJ1.102.

doi: 10.13145/bacdive16571.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea jiangxiensis
  • full scientific name: Nonomuraea jiangxiensis Li et al. 2012

@ref: 18198

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea jiangxiensis

full scientific name: Nonomuraea jiangxiensis Li et al. 2012 emend. Nouioui et al. 2018

strain designation: FXJ1.102

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
30370no
69480no95.304
69480100positive

pigmentation

  • @ref: 30370
  • production: no

multimedia

  • @ref: 18198
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45780.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18198STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
18198GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18198positivegrowth28mesophilic
30370positivegrowth20-45
30370positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30370positivegrowth05-09alkaliphile
30370positiveoptimum6

Physiology and metabolism

spore formation

@refspore formationconfidence
30370yes
69481yes100
69480yes100

halophily

  • @ref: 30370
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <6 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3037015963ribitol+carbon source
3037022599arabinose+carbon source
3037017057cellobiose+carbon source
3037023652dextrin+carbon source
3037028260galactose+carbon source
3037017234glucose+carbon source
3037017754glycerol+carbon source
3037017716lactose+carbon source
3037017306maltose+carbon source
3037029864mannitol+carbon source
3037037684mannose+carbon source
3037028053melibiose+carbon source
3037016634raffinose+carbon source
3037026546rhamnose+carbon source
3037017814salicin+carbon source
303704853esculin+hydrolysis
3037017632nitrate+reduction

enzymes

  • @ref: 30370
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
18198soilJiangxi Province, Nanchang CityChinaCHNAsia
67770Acidic soilNanchang City, Jiangxi ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 18198
  • description: Nonomuraea jiangxiensis strain FXJ1.102 16S ribosomal RNA gene, partial sequence
  • accession: FJ418910
  • length: 1486
  • database: ena
  • NCBI tax ID: 633440

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonomuraea jiangxiensis strain CGMCC 4.6533633440.3wgspatric633440
66792Nonomuraea jiangxiensis CGMCC 4.65332675903065draftimg633440
67770Nonomuraea jiangxiensis CGMCC 4.6533GCA_900099965scaffoldncbi633440

GC content

@refGC-contentmethod
1819872.6
6777072.6high performance liquid chromatography (HPLC)
6777070.6genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes83.89no
anaerobicno98.666no
halophileno92.06yes
spore-formingyes94.473yes
glucose-utilyes87.783yes
thermophileno98.79yes
flagellatedno97.103no
aerobicyes92.681no
motileno90.904no
glucose-fermentno91.032no

External links

@ref: 18198

culture collection no.: DSM 45780, CGMCC 4.6533, NBRC 106679, JCM 18570

straininfo link

  • @ref: 85598
  • straininfo: 403322

literature

  • topic: Phylogeny
  • Pubmed-ID: 21828009
  • title: Nonomuraea jiangxiensis sp. nov., isolated from acidic soil.
  • authors: Li X, Zhang L, Ding Y, Gao Y, Ruan J, Huang Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.034520-0
  • year: 2011
  • mesh: Acids/*metabolism, Actinomycetales/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil/analysis, *Soil Microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
18198Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45780)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45780
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30370Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2671028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85598Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403322.1StrainInfo: A central database for resolving microbial strain identifiers