Strain identifier

BacDive ID: 16556

Type strain: Yes

Species: Nonomuraea solani

Strain Designation: NEAU-Z6

Strain history: CGMCC 4.7037 <-- X. Wang et al.; Northeast Agric. Univ., China; NEAU-Z6.

NCBI tax ID(s): 1144553 (species)

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General

@ref: 18145

BacDive-ID: 16556

DSM-Number: 45729

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Nonomuraea solani NEAU-Z6 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface sterilized root of an eggplant .

NCBI tax id

  • NCBI tax id: 1144553
  • Matching level: species

strain history

@refhistory
18145<- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-Z6 <- J. Zao
67770CGMCC 4.7037 <-- X. Wang et al.; Northeast Agric. Univ., China; NEAU-Z6.

doi: 10.13145/bacdive16556.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea solani
  • full scientific name: Nonomuraea solani Wang et al. 2013

@ref: 18145

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea solani

full scientific name: Nonomuraea solani Wang et al. 2013 emend. Nouioui et al. 2018

strain designation: NEAU-Z6

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilityconfidence
30837positive1.43 µm0.81 µmno
69480positive99.999

colony morphology

@refcolony colormedium used
69424Ivory (1014), ochre yellow (1024)ISP 5
69424Ivory (1014), ochre yellow (1024)ISP 7
69424Light ivory (1015), ochre brown (8001)ISP 3
69424Ochre brown (8001)ISP 2
69424Ochre yellow (1024), ochre brown (8001)ISP 6
69424Ochre yellow (8001), clay brown (8003)suter without tyrosine
69424Ochre yellow (8001), fawn brown (8007)suter with tyrosine
69424Sand yellow (1002), ivory (1014)ISP 4

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69424noAerial myceliumISP 2
69424noAerial myceliumISP 3
69424noAerial myceliumISP 4
69424noAerial myceliumISP 5
69424noAerial myceliumISP 6
69424noAerial myceliumISP 7
69424noAerial myceliumsuter with tyrosine
69424noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
30837no
69424noMelanin
69424nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
18145https://www.dsmz.de/microorganisms/photos/DSM_45729.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69424DSM_45729_image3.jpegPlates (553, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69424DSM_45729_image4.jpegPlates (553, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18145GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
18145GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18145ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
18145CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://mediadive.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18145positivegrowth28mesophilic
30837positivegrowth20-39
30837positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30837positivegrowth07-09alkaliphile
30837positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30837
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30837yes
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
30837NaClpositivegrowth0-2 %
69424NaClpositivegrowth0-10 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3083722599arabinose+carbon source
3083728757fructose+carbon source
3083728260galactose+carbon source
3083717234glucose+carbon source
3083717716lactose+carbon source
3083717306maltose+carbon source
3083729864mannitol+carbon source
3083737684mannose+carbon source
3083716634raffinose+carbon source
3083726546rhamnose+carbon source
3083730911sorbitol+carbon source
3083717992sucrose+carbon source
3083718222xylose+carbon source
308374853esculin+hydrolysis
6942422599arabinose+growth
6942462968cellulose+/-growth
6942428757fructose+growth
6942417234glucose+growth
6942417268inositol+/-growth
6942437684mannose+growth
6942416634raffinose+/-growth
6942426546rhamnose+growth
6942417992sucrose+growth
6942418222xylose+growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
30837catalase+1.11.1.6
30837gelatinase+
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69424---+------+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69424+++/--+/----+/-+/-+----+/--+/--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitude
18145surface sterilized root of an eggplant (Solanum melongena L.)Solanum melongenaHeilongjiang province, Harbin (45° 45' N 126° 41' E)ChinaCHNAsia45.75126.683
67770Eggplant (Solanum melongena L.) rootSolanum melongenaHarbin, Heilongjiang ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_24414.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_2032;97_14842;98_18363;99_24414&stattab=map
  • Last taxonomy: Nonomuraea
  • 16S sequence: JQ073731
  • Sequence Identity:
  • Total samples: 236
  • soil counts: 153
  • aquatic counts: 2
  • animal counts: 58
  • plant counts: 23

Safety information

risk assessment

  • @ref: 18145
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18145
  • description: Nonomuraea solani strain NEAU-Z6 16S ribosomal RNA gene, partial sequence
  • accession: JQ073731
  • length: 1514
  • database: ena
  • NCBI tax ID: 1144553

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonomuraea solani strain CGMCC 4.70371144553.3wgspatric1144553
66792Nonomuraea solani CGMCC 4.70372675903140draftimg1144553
67770Nonomuraea solani CGMCC 4.7037GCA_900108335scaffoldncbi1144553

GC content

@refGC-contentmethod
1814564.5thermal denaturation, midpoint method (Tm)
3083764.51
6777070.4genome sequence analysis
6777064.51thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno90.276yes
flagellatedno97.023yes
gram-positiveyes84.246yes
anaerobicno99.256yes
aerobicyes92.219yes
halophileno91.003no
spore-formingyes93.94yes
glucose-utilyes88.205yes
glucose-fermentno91.39no
thermophileno99.169no

External links

@ref: 18145

culture collection no.: DSM 45729, CGMCC 4.7037, JCM 30783

straininfo link

  • @ref: 85584
  • straininfo: 400162

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23203622Nonomuraea solani sp. nov., an actinomycete isolated from eggplant root (Solanum melongena L.).Wang X, Zhao J, Liu C, Wang J, Shen Y, Jia F, Wang L, Zhang J, Yu C, Xiang WInt J Syst Evol Microbiol10.1099/ijs.0.045617-02012Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Solanum melongena/*microbiologyGenetics
Phylogeny24126467Nonomuraea shaanxiensis sp. nov., a novel actinomycete isolated from a soil sample.Zhang Y, Zhao J, Liu C, Shen Y, Jia F, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-013-0052-92013Actinomycetales/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyMetabolism
Phylogeny27561257Nonomuraea purpurea sp. nov., an actinomycete isolated from mangrove sediment.Suksaard P, Mingma R, Srisuk N, Matsumoto A, Takahashi Y, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0014572016Actinobacteria/*classification/genetics/isolation & purification, Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome
Phylogeny29767331Nonomuraea insulae sp. nov., isolated from forest soil.Saricaoglu S, Nouioui I, Ay H, Saygin H, Bektas KI, Guven K, Cetin D, Klenk HP, Isik K, Sahin NAntonie Van Leeuwenhoek10.1007/s10482-018-1097-62018Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Forests, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, TurkeyMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
18145Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45729)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45729
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30837Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2716728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69424Wink, J.https://cdn.dsmz.de/wink/DSM%2045729.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85584Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400162.1StrainInfo: A central database for resolving microbial strain identifiers