Strain identifier

BacDive ID: 16556

Type strain: Yes

Species: Nonomuraea solani

Strain Designation: NEAU-Z6

Culture col. no.: DSM 45729, CGMCC 4.7037

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18145

BacDive-ID: 16556

DSM-Number: 45729

keywords: spore-forming, aerobe, Bacteria, 16S sequence, genome sequence, mesophilic, gram-positive

description: Nonomuraea solani NEAU-Z6 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface sterilized root of an eggplant .

strain history: <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-Z6 <- J. Zao

doi: 10.13145/bacdive16556.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Nonomuraea
  • species: Nonomuraea solani
  • full scientific name: Nonomuraea solani Wang et al. 2013

@ref: 18145

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Nonomuraea

species: Nonomuraea solani

full scientific name: Nonomuraea solani Wang et al. 2013 emend. Nouioui et al. 2018

strain designation: NEAU-Z6

type strain: yes

Morphology

cell morphology

  • @ref: 30837
  • gram stain: positive
  • cell length: 1.43 µm
  • cell width: 0.81 µm
  • motility: no

multimedia

  • @ref: 18145
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45729.jpg
  • caption: Medium 65 28°C
  • license or copyright: (C) Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
  • intellectual property rights: © Leibniz-Institut DSMZ

pigmentation

  • @ref: 30837
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlink
18145GPHF-MEDIUM (DSMZ Medium 553)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf
18145GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

@refgrowthtypetemperaturerange
18145positivegrowth28mesophilic
30837positivegrowth20-39
30837positiveoptimum28mesophilic

culture pH

@refabilitytypepH
30837positivegrowth07-09
30837positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30837
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30837
  • spore formation: yes

halophily

  • @ref: 30837
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3083722599arabinose+carbon source
3083728757fructose+carbon source
3083728260galactose+carbon source
3083717234glucose+carbon source
3083717716lactose+carbon source
3083717306maltose+carbon source
3083729864mannitol+carbon source
3083737684mannose+carbon source
3083716634raffinose+carbon source
3083726546rhamnose+carbon source
3083730911sorbitol+carbon source
3083717992sucrose+carbon source
3083718222xylose+carbon source
308374853esculin+hydrolysis

enzymes

@refvalueactivityec
30837catalase+1.11.1.6
30837gelatinase+

Isolation, sampling and environmental information

isolation

  • @ref: 18145
  • sample type: surface sterilized root of an eggplant (Solanum melongena L.)
  • host species: Solanum melongena
  • geographic location: Heilongjiang province, Harbin (45° 45' N 126° 41' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 45.75
  • longitude: 126.683

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

Safety information

risk assessment

  • @ref: 18145
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18145
  • description: Nonomuraea solani strain NEAU-Z6 16S ribosomal RNA gene, partial sequence
  • accession: JQ073731
  • length: 1514
  • database: ena
  • NCBI tax ID: 1144553

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Nonomuraea solani CGMCC 4.7037GCA_900108335scaffoldncbi1144553
66792Nonomuraea solani strain CGMCC 4.70371144553.3wgspatric1144553
66792Nonomuraea solani CGMCC 4.70372675903140permanentimg1144553

GC content

@refGC-contentmethod
1814564.5thermal denaturation, midpoint method (Tm)
3083764.51

External links

@ref: 18145

culture collection no.: DSM 45729, CGMCC 4.7037

straininfo link

@refpassport
20218http://www.straininfo.net/strains/889595
20218http://www.straininfo.net/strains/889594

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18145Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45729)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45729
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2716710.1099/ijs.0.045617-0
30837Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27167
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)