Strain identifier
BacDive ID: 165557
Type strain:
Species: Komagataeibacter xylinus
Strain history: IFO 13693 <-- M. Kozaki 1B.
NCBI tax ID(s): 1234668 (strain), 28448 (species)
General
@ref: 67770
BacDive-ID: 165557
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Komagataeibacter xylinus JCM 7664 is a mesophilic, Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
28448 | species |
1234668 | strain |
strain history
- @ref: 67770
- history: IFO 13693 <-- M. Kozaki 1B.
doi: 10.13145/bacdive165557.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Komagataeibacter
- species: Komagataeibacter xylinus
- full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013
synonyms
@ref synonym 20215 Komagatabacter xylinus 20215 Bacterium xylinum 20215 Acetobacter xylinus 20215 Gluconoacetobacter xylinus 20215 Acetobacter aceti subsp. xylinus 20215 Acetobacter xylinum 20215 Acetobacter aceti subsp. xylinum 20215 Gluconacetobacter xylinus
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Komagataeibacter
species: Komagataeibacter xylinus
full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.996
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.999 |
69481 | no | 100 |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Komagataeibacter xylinus NBRC 13693 | GCA_000964505 | contig | ncbi | 1234668 |
66792 | Komagataeibacter xylinus NBRC 13693 | 1234668.3 | wgs | patric | 1234668 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 83.576 | no |
gram-positive | no | 96.737 | no |
anaerobic | no | 97.416 | no |
halophile | no | 91.541 | no |
spore-forming | no | 96.54 | no |
thermophile | no | 95.943 | yes |
glucose-util | yes | 87.706 | no |
flagellated | no | 97.476 | no |
aerobic | yes | 80.669 | no |
glucose-ferment | no | 86.456 | no |
External links
@ref: 67770
culture collection no.: JCM 7664, IFO 13693, NBRC 13693
straininfo link
- @ref: 114533
- straininfo: 62426
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 10382968 | Cloning of cellulose synthase genes from Acetobacter xylinum JCM 7664: implication of a novel set of cellulose synthase genes. | Umeda Y, Hirano A, Ishibashi M, Akiyama H, Onizuka T, Ikeuchi M, Inoue Y | DNA Res | 10.1093/dnares/6.2.109 | 1999 | Amino Acid Sequence, *Arabidopsis Proteins, Base Sequence, Cloning, Molecular, DNA Primers, Genes, Bacterial, Gluconacetobacter xylinus/enzymology/*genetics, Glucosyltransferases/*genetics, Molecular Sequence Data, Multigene Family, Open Reading Frames, Restriction Mapping, Sequence Homology, Amino Acid | Genetics |
Metabolism | 24274484 | Vitamin C enhances bacterial cellulose production in Gluconacetobacter xylinus. | Keshk SM | Carbohydr Polym | 10.1016/j.carbpol.2013.08.060 | 2013 | Ascorbic Acid/metabolism/*pharmacology, Cellulose/*biosynthesis/chemistry, Crystallization, Culture Media, Fermentation, Gluconacetobacter xylinus/drug effects/*metabolism, Gluconates/metabolism, Magnetic Resonance Spectroscopy, Polysaccharides, Bacterial/*biosynthesis/chemistry, Spectroscopy, Fourier Transform Infrared | Cultivation |
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
114533 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID62426.1 |