Strain identifier

BacDive ID: 165557

Type strain: No

Species: Komagataeibacter xylinus

Strain history: IFO 13693 <-- M. Kozaki 1B.

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 8.1 (current version)

General

@ref: 67770

BacDive-ID: 165557

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Komagataeibacter xylinus JCM 7664 is a mesophilic, Gram-negative bacterium of the family Acetobacteraceae.

NCBI tax id

NCBI tax idMatching level
28448species
1234668strain

strain history

  • @ref: 67770
  • history: IFO 13693 <-- M. Kozaki 1B.

doi: 10.13145/bacdive165557.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Komagataeibacter
  • species: Komagataeibacter xylinus
  • full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013
  • synonyms

    @refsynonym
    20215Komagatabacter xylinus
    20215Bacterium xylinum
    20215Acetobacter xylinus
    20215Gluconoacetobacter xylinus
    20215Acetobacter aceti subsp. xylinus
    20215Acetobacter xylinum
    20215Acetobacter aceti subsp. xylinum
    20215Gluconacetobacter xylinus

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Komagataeibacter

species: Komagataeibacter xylinus

full scientific name: Komagataeibacter xylinus (Brown 1886) Yamada et al. 2013

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.996

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.999
69481no100

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Komagataeibacter xylinus NBRC 13693GCA_000964505contigncbi1234668
66792Komagataeibacter xylinus NBRC 136931234668.3wgspatric1234668

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno83.576no
gram-positiveno96.737no
anaerobicno97.416no
halophileno91.541no
spore-formingno96.54no
thermophileno95.943yes
glucose-utilyes87.706no
flagellatedno97.476no
aerobicyes80.669no
glucose-fermentno86.456no

External links

@ref: 67770

culture collection no.: JCM 7664, IFO 13693, NBRC 13693

straininfo link

  • @ref: 114533
  • straininfo: 62426

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Enzymology10382968Cloning of cellulose synthase genes from Acetobacter xylinum JCM 7664: implication of a novel set of cellulose synthase genes.Umeda Y, Hirano A, Ishibashi M, Akiyama H, Onizuka T, Ikeuchi M, Inoue YDNA Res10.1093/dnares/6.2.1091999Amino Acid Sequence, *Arabidopsis Proteins, Base Sequence, Cloning, Molecular, DNA Primers, Genes, Bacterial, Gluconacetobacter xylinus/enzymology/*genetics, Glucosyltransferases/*genetics, Molecular Sequence Data, Multigene Family, Open Reading Frames, Restriction Mapping, Sequence Homology, Amino AcidGenetics
Metabolism24274484Vitamin C enhances bacterial cellulose production in Gluconacetobacter xylinus.Keshk SMCarbohydr Polym10.1016/j.carbpol.2013.08.0602013Ascorbic Acid/metabolism/*pharmacology, Cellulose/*biosynthesis/chemistry, Crystallization, Culture Media, Fermentation, Gluconacetobacter xylinus/drug effects/*metabolism, Gluconates/metabolism, Magnetic Resonance Spectroscopy, Polysaccharides, Bacterial/*biosynthesis/chemistry, Spectroscopy, Fourier Transform InfraredCultivation

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
114533Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID62426.1