Strain identifier
BacDive ID: 165470
Type strain: 
Species: Bifidobacterium longum subsp. longum
Strain history: T. Mitsuoka IV-52.
NCBI tax ID(s): 1679 (subspecies)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 165470
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Bifidobacterium longum subsp. longum JCM 7052 is a mesophilic bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 1679
- Matching level: subspecies
strain history
- @ref: 67770
- history: T. Mitsuoka IV-52.
doi: 10.13145/bacdive165470.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium longum subsp. longum
- full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium longum subsp. longum
full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008
type strain: no
Morphology
cell morphology
- @ref: 125438
- motility: no
- confidence: 93
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 97.4 |
| 125438 | no | 90.766 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
taxonmaps
- @ref: 69479
- File name: preview.99_48.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_39;97_41;98_45;99_48&stattab=map
- Last taxonomy: Bifidobacterium longum subclade
- 16S sequence: LC589223
- Sequence Identity:
- Total samples: 207055
- soil counts: 1795
- aquatic counts: 7450
- animal counts: 197025
- plant counts: 785
Sequence information
16S sequences
- @ref: 67770
- description: Bifidobacterium longum subsp. longum JCM 7052 gene for 16S rRNA, partial sequence
- accession: LC589223
- length: 1464
- database: nuccore
- NCBI tax ID: 1679
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium longum subsp. longum JCM 7052 | GCA_015100215 | complete | ncbi | 1679 |
| 66792 | Bifidobacterium longum subsp. longum strain JCM 7052 | 1679.270 | complete | patric | 1679 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.195 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 83.923 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 93.224 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.766 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 93 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 61.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 81.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 75.1 |
External links
@ref: 67770
culture collection no.: JCM 7052, CGMCC 1.3013
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 33674431 | Novel 3-O-alpha-d-Galactosyl-alpha-l-Arabinofuranosidase for the Assimilation of Gum Arabic Arabinogalactan Protein in Bifidobacterium longum subsp. longum. | Sasaki Y, Horigome A, Odamaki T, Xiao JZ, Ishiwata A, Ito Y, Kitahara K, Fujita K | Appl Environ Microbiol | 10.1128/AEM.02690-20 | 2021 | Bacterial Proteins/*genetics/metabolism, Bifidobacterium/*enzymology/genetics, Galactans/metabolism, Glycoside Hydrolases/*genetics/metabolism, Gum Arabic | Enzymology |
| Genetics | 33833028 | Complete Genome Sequence of Bifidobacterium longum subsp. longum JCM7052. | Yamamoto I, Ueno Y, Geshi M, Inagaki Y, Odamaki T, Fujita K | Microbiol Resour Announc | 10.1128/MRA.01193-20 | 2021 | ||
| 34429699 | Characterization of a GH36 alpha-D-Galactosidase Associated with Assimilation of Gum Arabic in Bifidobacterium longum subsp. longum JCM7052. | Sasaki Y, Uchimura Y, Kitahara K, Fujita K | J Appl Glycosci (1999) | 10.5458/jag.jag.JAG-2021_0004 | 2021 | |||
| Metabolism | 35108084 | Mechanism of Cooperative Degradation of Gum Arabic Arabinogalactan Protein by Bifidobacterium longum Surface Enzymes. | Sasaki Y, Komeno M, Ishiwata A, Horigome A, Odamaki T, Xiao JZ, Tanaka K, Ito Y, Kitahara K, Ashida H, Fujita K | Appl Environ Microbiol | 10.1128/aem.02187-21 | 2022 | *Bifidobacterium longum/metabolism, Galactans/metabolism, Glycoside Hydrolases/metabolism, Gum Arabic, Humans, Oligosaccharides/chemistry | Enzymology |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |