Strain identifier

BacDive ID: 165470

Type strain: No

Species: Bifidobacterium longum subsp. longum

Strain history: T. Mitsuoka IV-52.

NCBI tax ID(s): 1679 (subspecies)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 165470

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive

description: Bifidobacterium longum subsp. longum JCM 7052 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human feces.

NCBI tax id

  • NCBI tax id: 1679
  • Matching level: subspecies

strain history

  • @ref: 67770
  • history: T. Mitsuoka IV-52.

doi: 10.13145/bacdive165470.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium longum subsp. longum
  • full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium longum subsp. longum

full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive100
6948095.701no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 99.747

spore formation

@refspore formationconfidence
69480no99.997
69481no100

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human feces

taxonmaps

  • @ref: 69479
  • File name: preview.99_48.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_24;96_39;97_41;98_45;99_48&stattab=map
  • Last taxonomy: Bifidobacterium longum subclade
  • 16S sequence: LC589223
  • Sequence Identity:
  • Total samples: 207055
  • soil counts: 1795
  • aquatic counts: 7450
  • animal counts: 197025
  • plant counts: 785

Sequence information

16S sequences

  • @ref: 67770
  • description: Bifidobacterium longum subsp. longum JCM 7052 gene for 16S rRNA, partial sequence
  • accession: LC589223
  • length: 1464
  • database: ena
  • NCBI tax ID: 1679

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium longum subsp. longum JCM 7052GCA_015100215completencbi1679
66792Bifidobacterium longum subsp. longum strain JCM 70521679.270completepatric1679

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.099no
flagellatedno96.381no
gram-positiveyes90.452no
anaerobicyes98.484no
aerobicno96.989no
halophileno77.918no
spore-formingno96.44no
glucose-utilyes86.228no
thermophileno95.712yes
glucose-fermentyes82.725no

External links

@ref: 67770

culture collection no.: JCM 7052, CGMCC 1.3013

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism33674431Novel 3-O-alpha-d-Galactosyl-alpha-l-Arabinofuranosidase for the Assimilation of Gum Arabic Arabinogalactan Protein in Bifidobacterium longum subsp. longum.Sasaki Y, Horigome A, Odamaki T, Xiao JZ, Ishiwata A, Ito Y, Kitahara K, Fujita KAppl Environ Microbiol10.1128/AEM.02690-202021Bacterial Proteins/*genetics/metabolism, Bifidobacterium/*enzymology/genetics, Galactans/metabolism, Glycoside Hydrolases/*genetics/metabolism, Gum ArabicEnzymology
Genetics33833028Complete Genome Sequence of Bifidobacterium longum subsp. longum JCM7052.Yamamoto I, Ueno Y, Geshi M, Inagaki Y, Odamaki T, Fujita KMicrobiol Resour Announc10.1128/MRA.01193-202021
34429699Characterization of a GH36 alpha-D-Galactosidase Associated with Assimilation of Gum Arabic in Bifidobacterium longum subsp. longum JCM7052.Sasaki Y, Uchimura Y, Kitahara K, Fujita KJ Appl Glycosci (1999)10.5458/jag.jag.JAG-2021_00042021
Metabolism35108084Mechanism of Cooperative Degradation of Gum Arabic Arabinogalactan Protein by Bifidobacterium longum Surface Enzymes.Sasaki Y, Komeno M, Ishiwata A, Horigome A, Odamaki T, Xiao JZ, Tanaka K, Ito Y, Kitahara K, Ashida H, Fujita KAppl Environ Microbiol10.1128/aem.02187-212022*Bifidobacterium longum/metabolism, Galactans/metabolism, Glycoside Hydrolases/metabolism, Gum Arabic, Humans, Oligosaccharides/chemistryEnzymology

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1