Strain identifier
BacDive ID: 165469
Type strain:
Species: Bifidobacterium longum subsp. longum
Strain history: Y. Benno <-- T. Mitsuoka IV-50 (I-15-7).
NCBI tax ID(s): 1679 (subspecies)
General
@ref: 67770
BacDive-ID: 165469
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Bifidobacterium longum subsp. longum JCM 7050 is a mesophilic bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 1679
- Matching level: subspecies
strain history
- @ref: 67770
- history: Y. Benno <-- T. Mitsuoka IV-50 (I-15-7).
doi: 10.13145/bacdive165469.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium longum subsp. longum
- full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium longum subsp. longum
full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 92
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 91.266 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
Sequence information
16S sequences
- @ref: 124043
- description: Bifidobacterium longum subsp. longum gene for 16S rRNA, partial sequence, strain: JCM 7050.
- accession: AB116314
- length: 476
- database: nuccore
- NCBI tax ID: 1679
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Bifidobacterium longum subsp. longum JCM 7050 | GCA_014898215 | complete | ncbi | 1679 |
66792 | Bifidobacterium longum subsp. longum strain JCM 7050 | 1679.264 | complete | patric | 1679 |
66792 | Bifidobacterium longum subsp. longum JCM 7050 | GCA_020982785 | contig | ncbi | 1679 |
Genome-based predictions
predictions
@ref | trait | model | description | prediction | confidence | training_data |
---|---|---|---|---|---|---|
69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 86.873 | no |
69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 80.344 | no |
69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 90.542 | no |
69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.266 | no |
69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 90.5 | yes |
69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 92 | no |
External links
@ref: 67770
culture collection no.: JCM 7050, LMG 18899
straininfo link
- @ref: 114485
- straininfo: 12477
literature
- topic: Genetics
- Pubmed-ID: 35319259
- title: Draft Genome Sequences of a Bifidobacterium Strain and a Bacteroides Strain Isolated from a Human Stool Sample.
- authors: Shin W, Kim HJ
- journal: Microbiol Resour Announc
- DOI: 10.1128/mra.00011-22
- year: 2022
- topic2: Phylogeny
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
114485 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID12477.1 |
124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |