Strain identifier

BacDive ID: 165469

Type strain: No

Species: Bifidobacterium longum subsp. longum

Strain history: Y. Benno <-- T. Mitsuoka IV-50 (I-15-7).

NCBI tax ID(s): 1679 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 165469

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Bifidobacterium longum subsp. longum JCM 7050 is a mesophilic bacterium that was isolated from Human feces.

NCBI tax id

  • NCBI tax id: 1679
  • Matching level: subspecies

strain history

  • @ref: 67770
  • history: Y. Benno <-- T. Mitsuoka IV-50 (I-15-7).

doi: 10.13145/bacdive165469.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium longum subsp. longum
  • full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium longum subsp. longum

full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • motility: no
  • confidence: 92

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no91.266
69481no100

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human feces

Sequence information

16S sequences

  • @ref: 124043
  • description: Bifidobacterium longum subsp. longum gene for 16S rRNA, partial sequence, strain: JCM 7050.
  • accession: AB116314
  • length: 476
  • database: nuccore
  • NCBI tax ID: 1679

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium longum subsp. longum JCM 7050GCA_014898215completencbi1679
66792Bifidobacterium longum subsp. longum strain JCM 70501679.264completepatric1679
66792Bifidobacterium longum subsp. longum JCM 7050GCA_020982785contigncbi1679

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes86.873no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes80.344no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no90.542no
69480spore-formingspore-formingAbility to form endo- or exosporesno91.266no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno90.5yes
69480flagellatedmotile2+Ability to perform flagellated movementno92no

External links

@ref: 67770

culture collection no.: JCM 7050, LMG 18899

straininfo link

  • @ref: 114485
  • straininfo: 12477

literature

  • topic: Genetics
  • Pubmed-ID: 35319259
  • title: Draft Genome Sequences of a Bifidobacterium Strain and a Bacteroides Strain Isolated from a Human Stool Sample.
  • authors: Shin W, Kim HJ
  • journal: Microbiol Resour Announc
  • DOI: 10.1128/mra.00011-22
  • year: 2022
  • topic2: Phylogeny

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
114485Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID12477.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy