Strain identifier
BacDive ID: 165469
Type strain: 
Species: Bifidobacterium longum subsp. longum
Strain history: Y. Benno <-- T. Mitsuoka IV-50 (I-15-7).
NCBI tax ID(s): 1679 (subspecies)
General
@ref: 67770
BacDive-ID: 165469
keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Bifidobacterium longum subsp. longum JCM 7050 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from Human feces.
NCBI tax id
- NCBI tax id: 1679
- Matching level: subspecies
strain history
- @ref: 67770
- history: Y. Benno <-- T. Mitsuoka IV-50 (I-15-7).
doi: 10.13145/bacdive165469.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Bifidobacterium
- species: Bifidobacterium longum subsp. longum
- full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium longum subsp. longum
full scientific name: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 95.472 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.999
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.996 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Human feces
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bifidobacterium longum subsp. longum JCM 7050 | GCA_014898215 | complete | ncbi | 1679 |
| 66792 | Bifidobacterium longum subsp. longum strain JCM 7050 | 1679.264 | complete | patric | 1679 |
| 66792 | Bifidobacterium longum subsp. longum JCM 7050 | GCA_020982785 | contig | ncbi | 1679 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 96.853 | no |
| gram-positive | yes | 91.891 | no |
| anaerobic | yes | 98.164 | no |
| aerobic | no | 96.825 | no |
| halophile | no | 78.328 | no |
| spore-forming | no | 96.832 | no |
| glucose-util | yes | 84.59 | no |
| thermophile | no | 96.621 | yes |
| motile | no | 93.85 | no |
| glucose-ferment | yes | 83.255 | no |
External links
@ref: 67770
culture collection no.: JCM 7050, LMG 18899
straininfo link
- @ref: 114485
- straininfo: 12477
literature
- topic: Genetics
- Pubmed-ID: 35319259
- title: Draft Genome Sequences of a Bifidobacterium Strain and a Bacteroides Strain Isolated from a Human Stool Sample.
- authors: Shin W, Kim HJ
- journal: Microbiol Resour Announc
- DOI: 10.1128/mra.00011-22
- year: 2022
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114485 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID12477.1 |