Strain identifier

BacDive ID: 165449

Type strain: No

Species: Bifidobacterium longum subsp. infantis

Strain history: Y. Benno <-- T. Mitsuoka IV-7 (21143 I-63-7).

NCBI tax ID(s): 1682 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 165449

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-positive

description: Bifidobacterium longum subsp. infantis JCM 7007 is an anaerobe, Gram-positive bacterium that was isolated from Feces of a human infant.

NCBI tax id

  • NCBI tax id: 1682
  • Matching level: subspecies

strain history

  • @ref: 67770
  • history: Y. Benno <-- T. Mitsuoka IV-7 (21143 I-63-7).

doi: 10.13145/bacdive165449.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Bifidobacterium
  • species: Bifidobacterium longum subsp. infantis
  • full scientific name: Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008
  • synonyms

    • @ref: 20215
    • synonym: Bifidobacterium infantis

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium longum subsp. infantis

full scientific name: Bifidobacterium longum subsp. infantis (Reuter 1963) Mattarelli et al. 2008

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive91.071
6948093.78no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 96.223

spore formation

@refspore formationconfidence
69480no96.22
69481no99

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Feces of a human infant

Sequence information

16S sequences

  • @ref: 124043
  • description: Bifidobacterium longum subsp. infantis gene for 16S rRNA, partial sequence, strain: JCM 7007.
  • accession: AB116308
  • length: 472
  • database: nuccore
  • NCBI tax ID: 1682

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bifidobacterium longum subsp. infantis JCM 7007GCA_019660445contigncbi1682
66792Bifidobacterium longum subsp. infantis strain JCM 70071682.172wgspatric1682

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno93.78no
gram-positiveyes91.071no
anaerobicyes96.223no
aerobicno94.556no
halophileno73.4no
spore-formingno96.22no
glucose-utilyes88.589no
flagellatedno96.867no
thermophileno97.097yes
glucose-fermentyes86.353no

External links

@ref: 67770

culture collection no.: JCM 7007, LMG 18901

straininfo link

  • @ref: 114473
  • straininfo: 12479

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
114473Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID12479.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy