Strain identifier
BacDive ID: 165425
Type strain:
Species: Rhodococcus sp.
Strain history: H. Shimizu No. 04.
NCBI tax ID(s): 1831 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165425
keywords: genome sequence, 16S sequence, mesophilic, Gram-positive
description: Rhodococcus sp. JCM 6824 is a mesophilic, Gram-positive prokaryote.
NCBI tax id
- NCBI tax id: 1831
- Matching level: species
strain history
- @ref: 67770
- history: H. Shimizu No. 04.
doi: 10.13145/bacdive165425.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus sp.
- full scientific name: Rhodococcus Zopf 1891 (Approved Lists 1980)
synonyms
@ref synonym 20215 Prescottella 20215 Rhodococcoides 20215 Spelaeibacter 20215 Prescottia
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus sp.
full scientific name: Rhodococcus sp.
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | positive | 100 | |
69480 | 94.239 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.896
metabolite production
- @ref: 67770
- metabolite: aurachin RE
- production: yes
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_1118.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_1118&stattab=map
- Last taxonomy: Nocardiaceae
- 16S sequence: AB429533
- Sequence Identity:
- Total samples: 28787
- soil counts: 7777
- aquatic counts: 6494
- animal counts: 11681
- plant counts: 2835
Sequence information
16S sequences
- @ref: 67770
- description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 6824
- accession: AB429533
- length: 1440
- database: ena
- NCBI tax ID: 1833
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Rhodococcus erythropolis strain JCM 6824 | 1833.79 | wgs | patric | 1833 |
66792 | Rhodococcus erythropolis JCM 6824 | 2597490290 | draft | img | 1833 |
67770 | Rhodococcus erythropolis JCM 6824 | GCA_000747745 | scaffold | ncbi | 1833 |
GC content
- @ref: 67770
- GC-content: 61.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 88 | no |
motile | no | 92.585 | no |
gram-positive | yes | 83.528 | no |
anaerobic | no | 99.161 | no |
aerobic | yes | 88.575 | no |
halophile | no | 92.267 | no |
spore-forming | no | 66.814 | no |
glucose-util | yes | 91.014 | no |
flagellated | no | 98.153 | no |
thermophile | no | 99.561 | no |
glucose-ferment | no | 89.409 | no |
External links
@ref: 67770
culture collection no.: JCM 6824
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |