Strain identifier
BacDive ID: 165424
Type strain: 
Species: Rhodococcus sp.
Strain history: H. Shimizu No. 03.
NCBI tax ID(s): 1831 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165424
keywords: 16S sequence, mesophilic
description: Rhodococcus sp. JCM 6823 is a mesophilic prokaryote.
NCBI tax id
- NCBI tax id: 1831
- Matching level: species
strain history
- @ref: 67770
- history: H. Shimizu No. 03.
doi: 10.13145/bacdive165424.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus sp.
- full scientific name: Rhodococcus Zopf 1891 (Approved Lists 1980)
synonyms
@ref synonym 20215 Prescottella 20215 Rhodococcoides 20215 Spelaeibacter 20215 Prescottia
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus sp.
full scientific name: Rhodococcus sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_1118.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_1118&stattab=map
- Last taxonomy: Nocardiaceae
- 16S sequence: AB429532
- Sequence Identity:
- Total samples: 28787
- soil counts: 7777
- aquatic counts: 6494
- animal counts: 11681
- plant counts: 2835
Sequence information
16S sequences
- @ref: 67770
- description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: JCM 6823
- accession: AB429532
- length: 1440
- database: ena
- NCBI tax ID: 1833
GC content
- @ref: 67770
- GC-content: 60.9
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 6823
literature
- topic: Enzymology
- Pubmed-ID: 7764017
- title: Characterization of nitrile hydratase genes cloned by DNA screening from Rhodococcus erythropolis.
- authors: Duran R, Nishiyama M, Horinouchi S, Beppu T
- journal: Biosci Biotechnol Biochem
- DOI: 10.1271/bbb.57.1323
- year: 1993
- mesh: Amino Acid Sequence, Base Sequence, Blotting, Southern, Cloning, Molecular, DNA, Bacterial, *Genes, Bacterial, Hydro-Lyases/*genetics/metabolism, Molecular Sequence Data, Restriction Mapping, Rhodococcus/*enzymology/genetics, Sequence Homology, Amino Acid, Substrate Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |