Strain identifier

BacDive ID: 1654

Type strain: Yes

Species: Chelatococcus daeguensis

Strain Designation: K106

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 444444 (species)

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General

@ref: 16053

BacDive-ID: 1654

DSM-Number: 22069

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Chelatococcus daeguensis K106 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from wastewater of a textile dye works.

NCBI tax id

  • NCBI tax id: 444444
  • Matching level: species

strain history

@refhistory
16053<- KCTC <- J. H. Yoon, KRIBB
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive1654.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Chelatococcaceae
  • genus: Chelatococcus
  • species: Chelatococcus daeguensis
  • full scientific name: Chelatococcus daeguensis Yoon et al. 2008

@ref: 16053

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Chelatococcaceae

genus: Chelatococcus

species: Chelatococcus daeguensis

full scientific name: Chelatococcus daeguensis Yoon et al. 2008

strain designation: K106

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shape
23146negative1.0-4.0 µm0.3-0.6 µmrod-shaped
67771negative

colony morphology

@refcolony sizecolony colorincubation periodmedium used
231460.7-1.0 mmmoderate yellow3 daysTSA
602092 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16053TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
23146Trypticase Soy Agar (TSA)yes

culture temp

@refgrowthtypetemperaturerange
16053positivegrowth37mesophilic
23146nogrowth15psychrophilic
23146nogrowth52thermophilic
23146positivemaximum51thermophilic
23146positiveminimum20psychrophilic
23146positiveoptimum30-37mesophilic
60209positivegrowth30-42
67771positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
23146positiveoptimum7.0-7.5
23146positiveminimum5.5
23146positivemaximum10.0alkaliphile
23146nogrowth5.5
23146nogrowth10.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60209aerobe
67771aerobe

spore formation

  • @ref: 23146
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
23146NaClpositiveoptimum0-1.0 %(w/v)
23146NaClpositivegrowth0-5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2314627613amygdalin-builds acid from
2314629864mannitol-builds acid from
2314628053melibiose-builds acid from
2314630911sorbitol-builds acid from
2314617992sucrose-builds acid from
2314618333D-arabitol-carbon source
2314616443D-tagatose-carbon source
2314616813galactitol-carbon source
2314617113erythritol-carbon source
2314628087glycogen-carbon source
2314615443inulin-carbon source
2314618403L-arabitol-carbon source
2314617716lactose-carbon source
2314617306maltose-carbon source
2314629864mannitol-carbon source
231466731melezitose-carbon source
2314628053melibiose-carbon source
23146320061methyl alpha-D-glucopyranoside-carbon source
2314643943methyl alpha-D-mannoside-carbon source
2314674863methyl beta-D-xylopyranoside-carbon source
23146506227N-acetylglucosamine-carbon source
2314618401phenylacetate-carbon source
2314616634raffinose-carbon source
2314630911sorbitol-carbon source
2314628017starch-carbon source
2314617992sucrose-carbon source
2314627082trehalose-carbon source
2314632528turanose-carbon source
23146casein-hydrolysis
231465291gelatin-hydrolysis
2314617368hypoxanthine-hydrolysis
2314617895L-tyrosine-hydrolysis
2314628017starch-hydrolysis
2314653424tween 20-hydrolysis
2314653423tween 40-hydrolysis
2314653425tween 60-hydrolysis
2314653426tween 80-hydrolysis
2314615318xanthine-hydrolysis
2314616136hydrogen sulfide-other
2314622599arabinose+builds acid from
2314617234glucose+builds acid from
2314617268myo-inositol+builds acid from
23146168082-dehydro-D-gluconate+carbon source
23146174265-dehydro-D-gluconate+carbon source
2314617128adipate+carbon source
2314615963ribitol+carbon source
2314627613amygdalin+carbon source
2314618305arbutin+carbon source
2314617057cellobiose+carbon source
2314616947citrate+carbon source
2314617108D-arabinose+carbon source
2314662318D-lyxose+carbon source
2314665327D-xylose+carbon source
231464853esculin+carbon source
2314628757fructose+carbon source
2314628260galactose+carbon source
2314628066gentiobiose+carbon source
2314624265gluconate+carbon source
2314617234glucose+carbon source
2314617754glycerol+carbon source
2314617268myo-inositol+carbon source
2314630849L-arabinose+carbon source
2314618287L-fucose+carbon source
2314665328L-xylose+carbon source
2314625115malate+carbon source
2314637684mannose+carbon source
2314626546rhamnose+carbon source
2314633942ribose+carbon source
2314617814salicin+carbon source
2314617151xylitol+carbon source
231464853esculin+hydrolysis
2314626546rhamnose+/-builds acid from
2314627922sorbose+/-carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
231466104kanamycinyesno
231467507neomycinyesno
2314628971ampicillinyesyes
231463393carbenicillinyesyes
231463542cephalothinyesyes
2314617698chloramphenicolyesyes
2314617833gentamicinyesyes
231466472lincomycinyesyes
2314628368novobiocinyesyes
2314616869oleandomycinyesyes
2314618208penicillin gyesyes
231468309polymyxin byesyes
2314617076streptomycinyesyes
2314627902tetracyclineyesyes

enzymes

@refvalueactivityec
23146acid phosphatase+3.1.3.2
23146alkaline phosphatase+3.1.3.1
23146alpha-chymotrypsin-3.4.21.1
23146alpha-fucosidase-3.2.1.51
23146alpha-galactosidase-3.2.1.22
23146alpha-glucosidase-3.2.1.20
23146alpha-mannosidase-3.2.1.24
23146arginine dihydrolase+3.5.3.6
23146beta-galactosidase-3.2.1.23
23146beta-glucosidase-3.2.1.21
23146beta-glucuronidase-3.2.1.31
23146catalase+1.11.1.6
23146cystine arylamidase-3.4.11.3
23146cytochrome oxidase+1.9.3.1
23146esterase (C 4)+
23146esterase lipase (C 8)+
23146leucine arylamidase+3.4.11.1
23146lipase (C 14)-
23146lysine decarboxylase-4.1.1.18
23146N-acetyl-beta-glucosaminidase-3.2.1.52
23146naphthol-AS-BI-phosphohydrolase+
23146nitrate reductase+1.7.99.4
23146ornithine decarboxylase-4.1.1.17
23146trypsin-3.4.21.4
23146tryptophan deaminase-4.1.99.1
23146urease-3.5.1.5
23146valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16053wastewater of a textile dye worksDaeguRepublic of KoreaKORAsia
60209Wastewater of a dye-worksDaeguRepublic of KoreaKORAsia2004-04-01
67771From wastewaterDaeguRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial
#Engineered#Waste#Wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_1514.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_866;97_1014;98_1197;99_1514&stattab=map
  • Last taxonomy: Chelatococcus
  • 16S sequence: EF584507
  • Sequence Identity:
  • Total samples: 680
  • soil counts: 286
  • aquatic counts: 127
  • animal counts: 207
  • plant counts: 60

Safety information

risk assessment

  • @ref: 16053
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16053
  • description: Chelatococcus daeguensis strain K106 16S ribosomal RNA gene, partial sequence
  • accession: EF584507
  • length: 1442
  • database: ena
  • NCBI tax ID: 444444

GC content

  • @ref: 16053
  • GC-content: 68.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 16053

culture collection no.: DSM 22069, CCUG 54519, KCTC 12979

straininfo link

  • @ref: 71301
  • straininfo: 358871

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18768633Chelatococcus daeguensis sp. nov., isolated from wastewater of a textile dye works, and emended description of the genus Chelatococcus.Yoon JH, Kang SJ, Im WT, Lee ST, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.65291-02008Bacterial Typing Techniques, Base Composition, Beijerinckiaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, *Industrial Waste, Korea, Molecular Sequence Data, Nitrilotriacetic Acid/metabolism, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Polyamines/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature, Ubiquinone/analysis, *Water MicrobiologyGenetics
Phylogeny19661510Chelatococcus sambhunathii sp. nov., a moderately thermophilic alphaproteobacterium isolated from hot spring sediment.Panday D, Das SKInt J Syst Evol Microbiol10.1099/ijs.0.013466-02009Bacterial Typing Techniques, Beijerinckiaceae/*classification/genetics/*isolation & purification/physiology, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Genotype, Geologic Sediments/*microbiology, Hot Springs/*microbiology, Hot Temperature, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny25525126Chelatococcus caeni sp. nov., isolated from a biofilm reactor sludge sample.Jin L, Ko SR, Lee HG, Kim BH, Kim HS, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijs.0.0000322014Bacterial Typing Techniques, Base Composition, Beijerinckiaceae/*classification/genetics/isolation & purification, *Biofilms, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16053Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22069)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22069
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23146Jung-Hoon Yoon, So-Jung Kang, Wan-Taek Im, Sung-Taik Lee, Tae-Kwang Oh10.1099/ijs.0.65291-0Chelatococcus daeguensis sp. nov., isolated from wastewater of a textile dye works, and emended description of the genus ChelatococcusIJSEM 58: 2224-2228 200818768633
60209Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54519)https://www.ccug.se/strain?id=54519
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71301Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID358871.1StrainInfo: A central database for resolving microbial strain identifiers