Strain identifier
BacDive ID: 165384
Type strain: 
Species: Brevibacillus brevis
Strain history: S. Udaka 47.
NCBI tax ID(s): 358681 (strain), 1393 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165384
keywords: genome sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Brevibacillus brevis JCM 6285 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1393 | species |
| 358681 | strain |
strain history
- @ref: 67770
- history: S. Udaka 47.
doi: 10.13145/bacdive165384.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Brevibacillus
- species: Brevibacillus brevis
- full scientific name: Brevibacillus brevis (Migula 1900) Shida et al. 1996
synonyms
- @ref: 20215
- synonym: Bacillus brevis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Brevibacillus
species: Brevibacillus brevis
full scientific name: Brevibacillus brevis (Migula 1900) Shida et al. 1996
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 94.431 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 100 |
| 69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Brevibacillus brevis NBRC 100599 | GCA_000010165 | complete | ncbi | 358681 |
| 66792 | Brevibacillus brevis NBRC 100599 | 358681.3 | complete | patric | 358681 |
| 66792 | Brevibacillus brevis NBRC 100599 | 643692011 | complete | img | 358681 |
GC content
- @ref: 67770
- GC-content: 47.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 85.061 | no |
| flagellated | yes | 63.271 | no |
| gram-positive | yes | 75.116 | no |
| anaerobic | no | 98.202 | no |
| halophile | no | 93.197 | no |
| spore-forming | yes | 96.105 | no |
| glucose-util | yes | 86.779 | no |
| aerobic | yes | 87.253 | no |
| thermophile | no | 99.109 | yes |
| glucose-ferment | no | 93.788 | no |
External links
@ref: 67770
culture collection no.: JCM 6285, NBRC 100599
straininfo link
- @ref: 114450
- straininfo: 64856
literature
- topic: Genetics
- Pubmed-ID: 23618715
- title: Draft Genome Sequence of Biocontrol Bacterium Brevibacillus brevis Strain FJAT-0809-GLX.
- authors: Che J, Liu B, Lin Y, Tang W, Tang J
- journal: Genome Announc
- DOI: 10.1128/genomeA.00160-13
- year: 2013
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114450 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID64856.1 |