Strain identifier
BacDive ID: 165384
Type strain: 
Species: Brevibacillus brevis
Strain history: S. Udaka 47.
NCBI tax ID(s): 358681 (strain), 1393 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 165384
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Brevibacillus brevis JCM 6285 is a spore-forming, mesophilic bacterium that was isolated from Soil.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 358681 | strain |
| 1393 | species |
strain history
- @ref: 67770
- history: S. Udaka 47.
doi: 10.13145/bacdive165384.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Brevibacillus
- species: Brevibacillus brevis
- full scientific name: Brevibacillus brevis (Migula 1900) Shida et al. 1996
synonyms
- @ref: 20215
- synonym: Bacillus brevis
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Brevibacillus
species: Brevibacillus brevis
full scientific name: Brevibacillus brevis (Migula 1900) Shida et al. 1996
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 93.4
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
Sequence information
16S sequences
- @ref: 124043
- description: Brevibacillus brevis gene for 16S rRNA, partial sequence, strain: NBRC 100599.
- accession: AB681205
- length: 1461
- database: nuccore
- NCBI tax ID: 1393
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Brevibacillus brevis NBRC 100599 | GCA_000010165 | complete | ncbi | 358681 |
| 66792 | Brevibacillus brevis NBRC 100599 | 358681.3 | complete | patric | 358681 |
| 66792 | Brevibacillus brevis NBRC 100599 | 643692011 | complete | img | 358681 |
GC content
- @ref: 67770
- GC-content: 47.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 56.477 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.824 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 77.837 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 88.719 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.181 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 86.475 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 93.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 87.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 82.1 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 84.2 |
External links
@ref: 67770
culture collection no.: JCM 6285, NBRC 100599
straininfo link
- @ref: 114450
- straininfo: 64856
literature
- topic: Genetics
- Pubmed-ID: 23618715
- title: Draft Genome Sequence of Biocontrol Bacterium Brevibacillus brevis Strain FJAT-0809-GLX.
- authors: Che J, Liu B, Lin Y, Tang W, Tang J
- journal: Genome Announc
- DOI: 10.1128/genomeA.00160-13
- year: 2013
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 114450 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID64856.1 |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |