Strain identifier

BacDive ID: 165380

Type strain: No

Species: Comamonas terrigena

Strain history: J. Tamaoka KS 0079 <-- R. Hugh 260 ('Vibrio percolans') <-- E. Leifson.

NCBI tax ID(s): 32013 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 165380

keywords: 16S sequence, Bacteria, mesophilic

description: Comamonas terrigena JCM 6234 is a mesophilic bacterium of the family Comamonadaceae.

NCBI tax id

  • NCBI tax id: 32013
  • Matching level: species

strain history

  • @ref: 67770
  • history: J. Tamaoka KS 0079 <-- R. Hugh 260 ('Vibrio percolans') <-- E. Leifson.

doi: 10.13145/bacdive165380.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas terrigena
  • full scientific name: Comamonas terrigena (ex Hugh 1962) De Vos et al. 1985
  • synonyms

    @refsynonym
    20215Comamonas terrigena
    20215Comamonas percolans

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas terrigena

full scientific name: Comamonas terrigena De Vos et al. 1985

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_5975.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_704;97_822;98_4438;99_5975&stattab=map
  • Last taxonomy: Comamonas terrigena subclade
  • 16S sequence: LC379094
  • Sequence Identity:
  • Total samples: 697
  • soil counts: 34
  • aquatic counts: 451
  • animal counts: 190
  • plant counts: 22

Sequence information

16S sequences

  • @ref: 67770
  • description: Comamonas terrigena gene for 16S rRNA, partial sequence, strain: JCM 6234
  • accession: LC379094
  • length: 1453
  • database: ena
  • NCBI tax ID: 32013

GC content

  • @ref: 67770
  • GC-content: 65.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 6234, ATCC 17758, IAM 12053

straininfo link

  • @ref: 114449
  • straininfo: 36722

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
114449Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID36722.1