Strain identifier

BacDive ID: 16531

Type strain: Yes

Species: Microtetraspora glauca

Strain Designation: E 63, T 158

Culture col. no.: DSM 43311, ATCC 23057, IAM 14286, JCM 3300, KCC A-0134, BCRC 12445, CBS 624.67, CECT 3300, IFO 14761, IMET 9532, IMSNU 20092, KACC 20035, KCTC 9272, NBIMCC 1476, NBRC 14761, NCIMB 13268, NRRL B-3735, RIA 925, VKM Ac-663

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General

@ref: 10947

BacDive-ID: 16531

DSM-Number: 43311

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Microtetraspora glauca E 63 is a mesophilic Actinobacterium that was isolated from soil.

strain history

doi: 10.13145/bacdive16531.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Microtetraspora
  • species: Microtetraspora glauca
  • full scientific name: Microtetraspora glauca Thiemann et al. 1968 (Approved Lists 1980)

@ref: 10947

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Microtetraspora

species: Microtetraspora glauca

full scientific name: Microtetraspora glauca Thiemann et al. 1968 emend. Nouioui et al. 2018

strain designation: E 63, T 158

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10947GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://bacmedia.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10947ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://bacmedia.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10947GYM+S MEDIUM (DSMZ Medium 214)yeshttps://bacmedia.dsmz.de/medium/214Name: GYM+S MEDIUM (DSMZ Medium 214) Composition: Starch 20.0 g/l Agar 12.0 g/l Malt extract 10.0 g/l Glucose 4.0 g/l Yeast extract 4.0 g/l CaCO3 2.0 g/l Distilled water
10947CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://bacmedia.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 15.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10947positivegrowth37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H2), MK-9(H6), MK-9(III,VIII-H4), MK-9(H2), MK-9

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
10947soilItalyITAEurope
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 10947
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218M.glauca 16S rRNA geneX978911449ena1996
20218Microtetraspora glauca gene for 16S ribosomal RNA, partial sequenceD854901475ena1996
20218Microtetraspora glauca 16S rRNA geneU489741416ena1996
20218Sphingomonas sp. gene for 16S rRNA, partial sequence, strain:IFO 15915AB0339491416ena28214
20218Sphingomonas sp. NBRC 15915 gene for 16S rRNA, partial sequenceAB6809981414ena1113659

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microtetraspora glauca NBRC 14761GCA_001570385scaffoldncbi1996
66792Microtetraspora glauca strain NBRC 147611996.4wgspatric1996
66792Microtetraspora glauca strain NRRL B-37351996.3wgspatric1996
66792Microtetraspora glauca NRRL B-37352772190673draftimg1996
66792Microtetraspora glauca NBRC 147612724679247draftimg1996
67770Microtetraspora glauca strain NBRC 14761, whole genome shotgun sequencing projectBBYL00000000nuccore1996

GC content

@refGC-contentmethod
6777070.2genome sequence analysis
6777066thermal denaturation, midpoint method (Tm)

External links

@ref: 10947

culture collection no.: DSM 43311, ATCC 23057, IAM 14286, JCM 3300, KCC A-0134, BCRC 12445, CBS 624.67, CECT 3300, IFO 14761, IMET 9532, IMSNU 20092, KACC 20035, KCTC 9272, NBIMCC 1476, NBRC 14761, NCIMB 13268, NRRL B-3735, RIA 925, VKM Ac-663

straininfo link

@refpassport
20218http://www.straininfo.net/strains/168195
20218http://www.straininfo.net/strains/102308
20218http://www.straininfo.net/strains/168196
20218http://www.straininfo.net/strains/168197
20218http://www.straininfo.net/strains/168198

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10947Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43311
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/