Strain identifier

BacDive ID: 16531

Type strain: Yes

Species: Microtetraspora glauca

Strain Designation: E 63, T 158

Strain history: KCC A-0300 <-- ATCC 23057 <-- J. E. Thiemann T/158.

NCBI tax ID(s): 1996 (species)

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General

@ref: 10947

BacDive-ID: 16531

DSM-Number: 43311

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Microtetraspora glauca E 63 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1996
  • Matching level: species

strain history

@refhistory
10947<- S.T. Williams, E 63 <- ATCC <- J.E. Thiemann, T 158
67770KCC A-0300 <-- ATCC 23057 <-- J. E. Thiemann T/158.

doi: 10.13145/bacdive16531.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Microtetraspora
  • species: Microtetraspora glauca
  • full scientific name: Microtetraspora glauca Thiemann et al. 1968 (Approved Lists 1980)

@ref: 10947

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Microtetraspora

species: Microtetraspora glauca

full scientific name: Microtetraspora glauca Thiemann et al. 1968 emend. Nouioui et al. 2018

strain designation: E 63, T 158

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10947GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10947ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10947positivegrowth37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H2), MK-9(H6), MK-9(III,VIII-H4), MK-9(H2), MK-9

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
10947soilItalyITAEurope
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 10947
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218M.glauca 16S rRNA geneX978911449ena1996
20218Microtetraspora glauca gene for 16S ribosomal RNA, partial sequenceD854901475ena1996
20218Microtetraspora glauca 16S rRNA geneU489741416ena1996
20218Sphingomonas sp. gene for 16S rRNA, partial sequence, strain:IFO 15915AB0339491416ena28214
20218Sphingomonas sp. NBRC 15915 gene for 16S rRNA, partial sequenceAB6809981414ena1113659

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microtetraspora glauca strain NBRC 147611996.4wgspatric1996
66792Microtetraspora glauca NBRC 147612724679247draftimg1996
67770Microtetraspora glauca NBRC 14761GCA_001570385scaffoldncbi1996

GC content

@refGC-contentmethod
6777070.2genome sequence analysis
6777066thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.71no
gram-positiveyes86.63no
anaerobicno99no
aerobicyes91.357no
halophileno93.284no
spore-formingyes95.251no
glucose-utilyes89.646no
flagellatedno98.598no
thermophileno94.203yes
glucose-fermentno92.196no

External links

@ref: 10947

culture collection no.: DSM 43311, ATCC 23057, IAM 14286, JCM 3300, KCC A-0134, BCRC 12445, CBS 624.67, CECT 3300, IFO 14761, IMET 9532, IMSNU 20092, KACC 20035, KCTC 9272, NBIMCC 1476, NBRC 14761, NCIMB 13268, NRRL B-3735, RIA 925, VKM Ac-663

straininfo link

  • @ref: 85562
  • straininfo: 62897

literature

  • topic: Enzymology
  • Pubmed-ID: 2775496
  • title: Purification and N-terminal amino-acid sequences of bacterial malate dehydrogenases from six actinomycetales strains and from Phenylobacterium immobile, strain E.
  • authors: Rommel TO, Hund HK, Speth AR, Lingens F
  • journal: Biol Chem Hoppe Seyler
  • DOI: 10.1515/bchm3.1989.370.2.763
  • year: 1989
  • mesh: Actinomycetales/*enzymology, Amino Acid Sequence, Ammonium Sulfate, Chromatography, Affinity, Chromatography, DEAE-Cellulose, Chromatography, Ion Exchange, Culture Media, Electrophoresis, Polyacrylamide Gel, Gram-Negative Bacteria/*enzymology, Malate Dehydrogenase/*analysis/isolation & purification, Molecular Sequence Data
  • topic2: Cultivation

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10947Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43311)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43311
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85562Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID62897.1StrainInfo: A central database for resolving microbial strain identifiers