Strain identifier
BacDive ID: 165309
Type strain:
Species: Nocardia seriolae
Strain history: K. Hatai <-- N. Matsumoto KRN 8403.
NCBI tax ID(s): 37332 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165309
keywords: 16S sequence, Bacteria, mesophilic
description: Nocardia seriolae JCM 5850 is a mesophilic bacterium that was isolated from Kidney of cultured Japanese flounder .
NCBI tax id
- NCBI tax id: 37332
- Matching level: species
strain history
- @ref: 67770
- history: K. Hatai <-- N. Matsumoto KRN 8403.
doi: 10.13145/bacdive165309.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia seriolae
- full scientific name: Nocardia seriolae Kudo et al. 1988
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Nocardiaceae
genus: Nocardia
species: Nocardia seriolae
full scientific name: Nocardia seriolae Kudo et al. 1988
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Kidney of cultured Japanese flounder (Paralichthys olivaceus)
- host species: Paralichthys olivaceus
- geographic location: Kagawa Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_1837.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_448;98_1452;99_1837&stattab=map
- Last taxonomy: Nocardia
- 16S sequence: AB255700
- Sequence Identity:
- Total samples: 831
- soil counts: 541
- aquatic counts: 38
- animal counts: 141
- plant counts: 111
Sequence information
16S sequences
- @ref: 67770
- description: Nocardia seriolae gene for 16S rRNA, partial sequence, strain: JCM 5850
- accession: AB255700
- length: 1436
- database: ena
- NCBI tax ID: 37332
GC content
- @ref: 67770
- GC-content: 67.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 5850, IMSNU 21190
straininfo link
- @ref: 114392
- straininfo: 64652
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
114392 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID64652.1 |