Strain identifier

BacDive ID: 165309

Type strain: No

Species: Nocardia seriolae

Strain history: K. Hatai <-- N. Matsumoto KRN 8403.

NCBI tax ID(s): 37332 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 165309

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardia seriolae JCM 5850 is a mesophilic bacterium that was isolated from Kidney of cultured Japanese flounder .

NCBI tax id

  • NCBI tax id: 37332
  • Matching level: species

strain history

  • @ref: 67770
  • history: K. Hatai <-- N. Matsumoto KRN 8403.

doi: 10.13145/bacdive165309.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia seriolae
  • full scientific name: Nocardia seriolae Kudo et al. 1988

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia seriolae

full scientific name: Nocardia seriolae Kudo et al. 1988

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 26
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Kidney of cultured Japanese flounder (Paralichthys olivaceus)
  • host species: Paralichthys olivaceus
  • geographic location: Kagawa Pref.
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_1837.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_448;98_1452;99_1837&stattab=map
  • Last taxonomy: Nocardia
  • 16S sequence: AB255700
  • Sequence Identity:
  • Total samples: 831
  • soil counts: 541
  • aquatic counts: 38
  • animal counts: 141
  • plant counts: 111

Sequence information

16S sequences

  • @ref: 67770
  • description: Nocardia seriolae gene for 16S rRNA, partial sequence, strain: JCM 5850
  • accession: AB255700
  • length: 1436
  • database: ena
  • NCBI tax ID: 37332

GC content

  • @ref: 67770
  • GC-content: 67.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 5850, IMSNU 21190

straininfo link

  • @ref: 114392
  • straininfo: 64652

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
114392Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID64652.1