Strain identifier

BacDive ID: 1652

Type strain: Yes

Species: Chelatococcus asaccharovorans

Strain Designation: TE2

Strain history: <- T. Egli; TE2

NCBI tax ID(s): 28210 (species)

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General

@ref: 2685

BacDive-ID: 1652

DSM-Number: 6462

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, coccus-shaped

description: Chelatococcus asaccharovorans TE2 is a mesophilic, coccus-shaped bacterium that was isolated from waste water and soil.

NCBI tax id

  • NCBI tax id: 28210
  • Matching level: species

strain history

  • @ref: 2685
  • history: <- T. Egli; TE2

doi: 10.13145/bacdive1652.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Chelatococcaceae
  • genus: Chelatococcus
  • species: Chelatococcus asaccharovorans
  • full scientific name: Chelatococcus asaccharovorans Auling et al. 1993

@ref: 2685

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Chelatococcaceae

genus: Chelatococcus

species: Chelatococcus asaccharovorans

full scientific name: Chelatococcus asaccharovorans Auling et al. 1993

strain designation: TE2

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stainconfidence
23363coccus-shapedno
69480negative99.875

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2685PLATE COUNT AGAR (DSMZ Medium 464)yeshttps://mediadive.dsmz.de/medium/464Name: PLATE COUNT AGAR (DSMZ Medium 464) Composition: Agar 15.0 g/l Tryptone 5.0 g/l Yeast extract 2.5 g/l Dextrose 1.0 g/l Distilled water
2685NITRILOTRIACETATE MEDIUM (DSMZ Medium 463)yeshttps://mediadive.dsmz.de/medium/463Name: NITRILOTRIACETATE MEDIUM (DSMZ Medium 463) Composition: Nitrilotriacetate 1.0 g/l MgSO4 x 7 H2O 1.0 g/l Na2HPO4 x 2 H2O 0.41 g/l KH2PO4 0.26 g/l CaCl2 x 2 H2O 0.2 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00012 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 6.8e-05 g/l H3BO3 6.2e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Pantothenic acid 5e-05 g/l Riboflavin 5e-05 g/l alpha-lipoic acid 5e-05 g/l Vitamin B12 5e-05 g/l Nicotine amide 2.5e-05 g/l Nicotinic acid 2.5e-05 g/l Na2MoO4 x 2 H2O 2.4e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l CuCl2 x 2 H2O 1.7e-05 g/l Pyridoxamine hydrochloride 1e-05 g/l HCl Distilled water

culture temp

  • @ref: 2685
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

culture pH

@refabilitytypepHPH range
23363positiveminimum5.5
23363positivemaximum9.5alkaliphile
23363positiveoptimum7.0-8.0

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.989

compound production

@refcompound
2685iminodiacetate dehydrogenase
2685nitrilotriacetate monooxygenase

halophily

  • @ref: 23363
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-2.5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2314627613amygdalin-builds acid from
2314622599arabinose-builds acid from
2314617234glucose-builds acid from
2314617268myo-inositol-builds acid from
2314629864mannitol-builds acid from
2314628053melibiose-builds acid from
2314626546rhamnose-builds acid from
2314630911sorbitol-builds acid from
2314617992sucrose-builds acid from
2336315963ribitol-carbon source
2336317057cellobiose-carbon source
233634853esculin-carbon source
2336328260galactose-carbon source
2336317754glycerol-carbon source
2336317268myo-inositol-carbon source
2336325094lysine-carbon source
2336316811methionine-carbon source
2336326546rhamnose-carbon source
2336317814salicin-carbon source
2336326986threonine-carbon source
2336318186tyrosine-carbon source
2336317151xylitol-carbon source
2314615963ribitol-carbon source
2314627613amygdalin-carbon source
2314618305arbutin-carbon source
2314617057cellobiose-carbon source
2314616947citrate-carbon source
2314618333D-arabitol-carbon source
2314616443D-tagatose-carbon source
2314616813galactitol-carbon source
2314617113erythritol-carbon source
231464853esculin-carbon source
2314628757fructose-carbon source
2314628260galactose-carbon source
2314628066gentiobiose-carbon source
2314617754glycerol-carbon source
2314628087glycogen-carbon source
2314617268myo-inositol-carbon source
2314615443inulin-carbon source
2314618403L-arabitol-carbon source
2314617716lactose-carbon source
2314617306maltose-carbon source
2314629864mannitol-carbon source
231466731melezitose-carbon source
2314628053melibiose-carbon source
23146320061methyl alpha-D-glucopyranoside-carbon source
2314643943methyl alpha-D-mannoside-carbon source
2314674863methyl beta-D-xylopyranoside-carbon source
23146506227N-acetylglucosamine-carbon source
2314616634raffinose-carbon source
2314617814salicin-carbon source
2314630911sorbitol-carbon source
2314627922sorbose-carbon source
2314628017starch-carbon source
2314617992sucrose-carbon source
2314627082trehalose-carbon source
2314632528turanose-carbon source
2314617151xylitol-carbon source
23146casein-hydrolysis
231465291gelatin-hydrolysis
2314617368hypoxanthine-hydrolysis
2314617895L-tyrosine-hydrolysis
2314628017starch-hydrolysis
2314653424tween 20-hydrolysis
2314653423tween 40-hydrolysis
2314653425tween 60-hydrolysis
2314653426tween 80-hydrolysis
2314615318xanthine-hydrolysis
2314616136hydrogen sulfide-other
2336322599arabinose+builds acid from
2336317234glucose+builds acid from
2336317268myo-inositol+builds acid from
2336326546rhamnose+builds acid from
2336315356cysteine+carbon source
2336317108D-arabinose+carbon source
2336324265gluconate+carbon source
2336315428glycine+carbon source
2336337684mannose+carbon source
2336318222xylose+carbon source
23146168082-dehydro-D-gluconate+carbon source
23146174265-dehydro-D-gluconate+carbon source
2314617128adipate+carbon source
2314617108D-arabinose+carbon source
2314662318D-lyxose+carbon source
2314665327D-xylose+carbon source
2314624265gluconate+carbon source
2314617234glucose+carbon source
2314630849L-arabinose+carbon source
2314618287L-fucose+carbon source
2314625115malate+carbon source
2314637684mannose+carbon source
2314618401phenylacetate+carbon source
2314626546rhamnose+carbon source
2314633942ribose+carbon source
233635291gelatin+hydrolysis
231464853esculin+hydrolysis
2314665328L-xylose+/-carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
2314617698chloramphenicolyesno
2314617076streptomycinyesno
2314628971ampicillinyesyes
231463393carbenicillinyesyes
231463542cephalothinyesyes
2314617833gentamicinyesyes
231466104kanamycinyesyes
231466472lincomycinyesyes
231467507neomycinyesyes
2314628368novobiocinyesyes
2314616869oleandomycinyesyes
2314618208penicillin gyesyes
231468309polymyxin byesyes
2314627902tetracyclineyesyes

enzymes

@refvalueactivityec
23146acid phosphatase+3.1.3.2
23146alkaline phosphatase+3.1.3.1
23146alpha-chymotrypsin-3.4.21.1
23146alpha-fucosidase-3.2.1.51
23146alpha-galactosidase-3.2.1.22
23146alpha-glucosidase-3.2.1.20
23146alpha-mannosidase-3.2.1.24
23146arginine dihydrolase+3.5.3.6
23146beta-galactosidase-3.2.1.23
23146beta-glucosidase-3.2.1.21
23146beta-glucuronidase-3.2.1.31
23146cystine arylamidase-3.4.11.3
23146cytochrome oxidase+1.9.3.1
23146esterase (C 4)+
23146esterase lipase (C 8)+
23146leucine arylamidase+3.4.11.1
23146lipase (C 14)-
23146lysine decarboxylase-4.1.1.18
23146N-acetyl-beta-glucosaminidase-3.2.1.52
23146naphthol-AS-BI-phosphohydrolase+
23146nitrate reductase+1.7.99.4
23146ornithine decarboxylase-4.1.1.17
23146trypsin-3.4.21.4
23146tryptophan deaminase-4.1.99.1
23146urease+3.5.1.5
23146valine arylamidase-

Isolation, sampling and environmental information

isolation

  • @ref: 2685
  • sample type: waste water and soil
  • geographic location: Dübendorf
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Wastewater
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_27358.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_13554;97_16507;98_20481;99_27358&stattab=map
  • Last taxonomy: Chelatococcus asaccharovorans subclade
  • 16S sequence: AJ294349
  • Sequence Identity:
  • Total samples: 842
  • soil counts: 246
  • aquatic counts: 343
  • animal counts: 85
  • plant counts: 168

Safety information

risk assessment

  • @ref: 2685
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218C.asaccharovorans 16S rRNA fragmentX64551157ena28210
2685Chelatococcus asaccharovorans partial 16S rRNA gene, strain TE2AJ2943491366ena28210

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chelatococcus asaccharovorans DSM 6462GCA_018398275contigncbi28210
66792Chelatococcus asaccharovorans DSM 6462GCA_003201475scaffoldncbi28210
66792Chelatococcus asaccharovorans strain DSM 646228210.14wgspatric28210
66792Chelatococcus asaccharovorans strain DSM 646228210.3wgspatric28210
66792Chelatococcus asaccharovorans DSM 64622756170239draftimg28210
66792Chelatococcus asaccharovorans DSM 64622928729937draftimg28210

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno93.996no
gram-positiveno98.47no
anaerobicno98.919no
halophileno94.503no
spore-formingno95.716no
glucose-utilyes88.949yes
aerobicyes91.739no
thermophileno98.221yes
motileno85.165yes
glucose-fermentno90.457no

External links

@ref: 2685

culture collection no.: DSM 6462, ATCC 51531

straininfo link

  • @ref: 71299
  • straininfo: 43036

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18768633Chelatococcus daeguensis sp. nov., isolated from wastewater of a textile dye works, and emended description of the genus Chelatococcus.Yoon JH, Kang SJ, Im WT, Lee ST, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.65291-02008Bacterial Typing Techniques, Base Composition, Beijerinckiaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, *Industrial Waste, Korea, Molecular Sequence Data, Nitrilotriacetic Acid/metabolism, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Polyamines/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature, Ubiquinone/analysis, *Water MicrobiologyGenetics
Phylogeny19661510Chelatococcus sambhunathii sp. nov., a moderately thermophilic alphaproteobacterium isolated from hot spring sediment.Panday D, Das SKInt J Syst Evol Microbiol10.1099/ijs.0.013466-02009Bacterial Typing Techniques, Beijerinckiaceae/*classification/genetics/*isolation & purification/physiology, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Genotype, Geologic Sediments/*microbiology, Hot Springs/*microbiology, Hot Temperature, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny25525126Chelatococcus caeni sp. nov., isolated from a biofilm reactor sludge sample.Jin L, Ko SR, Lee HG, Kim BH, Kim HS, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijs.0.0000322014Bacterial Typing Techniques, Base Composition, Beijerinckiaceae/*classification/genetics/isolation & purification, *Biofilms, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistryGenetics
Enzymology34332189Acesulfame aerobic biodegradation by enriched consortia and Chelatococcus spp.: Kinetics, transformation products, and genomic characterization.Huang Y, Deng Y, Law JC, Yang Y, Ding J, Leung KS, Zhang TWater Res10.1016/j.watres.2021.1174542021Alphaproteobacteria, Biodegradation, Environmental, *Genomics, Kinetics, *Sweetening Agents, ThiazinesGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2685Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6462)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6462
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23146Jung-Hoon Yoon, So-Jung Kang, Wan-Taek Im, Sung-Taik Lee, Tae-Kwang Oh10.1099/ijs.0.65291-0Chelatococcus daeguensis sp. nov., isolated from wastewater of a textile dye works, and emended description of the genus ChelatococcusIJSEM 58: 2224-2228 200818768633
23363Digvijay Panday, Subrata K. Das10.1099/ijs.0.013466-0Chelatococcus sambhunathii sp. nov., a moderately thermophilic alphaproteobacterium isolated from hot spring sedimentIJSEM 60: 861-865 201019661510
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71299Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43036.1StrainInfo: A central database for resolving microbial strain identifiers