Strain identifier
BacDive ID: 16517
Type strain: 
Species: Microbispora rosea
Strain history: KCC A-0023 <-- H. Nonomura M-5.
NCBI tax ID(s): 58118 (subspecies)
version 8.1 (current version)
General
@ref: 11321
BacDive-ID: 16517
DSM-Number: 43837
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Microbispora rosea DSM 43837 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 58118
- Matching level: subspecies
strain history
| @ref | history |
|---|---|
| 11321 | <- JCM (Microbispora diastatica) <- H. Nomomura, M-5 |
| 67770 | KCC A-0023 <-- H. Nonomura M-5. |
doi: 10.13145/bacdive16517.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Microbispora
- species: Microbispora rosea
- full scientific name: Microbispora rosea Nonomura and Ohara 1957 (Approved Lists 1980)
synonyms
@ref synonym 20215 Microbispora parva 20215 Microbispora karnatakensis 20215 Microbispora chromogenes 20215 Microbispora indica 20215 Microbispora diastatica 20215 Microbispora amethystogenes
@ref: 11321
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Microbispora
species: Microbispora rosea subsp. rosea
full scientific name: Microbispora rosea subsp. rosea (Nonomura and Ohara 1957) Miyadoh et al. 1991
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 11321 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf |
| 11321 | OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium248.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11321 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H2), MK-9, MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 11321 | soil |
| 67770 | Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_7749.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_910;97_1060;98_1268;99_7749&stattab=map
- Last taxonomy: Microbispora
- 16S sequence: U48990
- Sequence Identity:
- Total samples: 464
- soil counts: 327
- aquatic counts: 10
- animal counts: 14
- plant counts: 113
Safety information
risk assessment
- @ref: 11321
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Microbispora diastatica 16S rRNA gene
- accession: U48990
- length: 1413
- database: ena
- NCBI tax ID: 58118
Genome sequences
- @ref: 67770
- description: Microbispora rosea subsp. rosea NRRL B-2630
- accession: GCA_000718465
- assembly level: contig
- database: ncbi
- NCBI tax ID: 58118
GC content
| @ref | GC-content | method |
|---|---|---|
| 67770 | 71 | thermal denaturation, midpoint method (Tm) |
| 67770 | 68.9 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 91.372 | no |
| flagellated | no | 97.608 | no |
| gram-positive | yes | 88.933 | no |
| anaerobic | no | 98.744 | no |
| halophile | no | 92.639 | no |
| spore-forming | yes | 93.831 | no |
| thermophile | no | 98.763 | yes |
| glucose-util | yes | 89.908 | no |
| aerobic | yes | 88.98 | no |
| glucose-ferment | no | 92.317 | no |
External links
@ref: 11321
culture collection no.: DSM 43837, ATCC 33325, CBS 305.61, IFO 14041, JCM 3023, KCC A-0023, NBRC 14041, NRRL B-2630, RIA 766, BCRC 13321, CGMCC 4.1342, IFM 1265, IMSNU 20076, KCTC 9312, NBRC 101785
straininfo link
- @ref: 85550
- straininfo: 92879
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11321 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43837) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43837 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85550 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92879.1 | StrainInfo: A central database for resolving microbial strain identifiers |