Strain identifier

BacDive ID: 16516

Type strain: No

Species: Microbispora rosea

Strain Designation: M-22

Strain history: KCC A-0022 <-- H. Nonomura M-22.

NCBI tax ID(s): 58118 (subspecies)

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General

@ref: 10833

BacDive-ID: 16516

DSM-Number: 43165

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Microbispora rosea M-22 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 58118
  • Matching level: subspecies

strain history

@refhistory
10833<- KCC (Microbispora chromogenes) <- H. Nonomura, FYU, M-22
67770KCC A-0022 <-- H. Nonomura M-22.

doi: 10.13145/bacdive16516.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Microbispora
  • species: Microbispora rosea
  • full scientific name: Microbispora rosea Nonomura and Ohara 1957 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Microbispora parva
    20215Microbispora karnatakensis
    20215Microbispora chromogenes
    20215Microbispora indica
    20215Microbispora diastatica
    20215Microbispora amethystogenes

@ref: 10833

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Microbispora

species: Microbispora rosea subsp. rosea

full scientific name: Microbispora rosea subsp. rosea (Nonomura and Ohara 1957) Miyadoh et al. 1991

strain designation: M-22

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10833ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10833GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf

culture temp

@refgrowthtypetemperaturerange
10833positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2), MK-9(H4), MK-9

Isolation, sampling and environmental information

isolation

@refsample type
10833soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7749.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_910;97_1060;98_1268;99_7749&stattab=map
  • Last taxonomy: Microbispora
  • 16S sequence: U48989
  • Sequence Identity:
  • Total samples: 464
  • soil counts: 327
  • aquatic counts: 10
  • animal counts: 14
  • plant counts: 113

Safety information

risk assessment

  • @ref: 10833
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Microbispora chromogenes 16S-23S ribosomal RNA spacer regionAF004007405ena58118
67770Microbispora rosea subsp. rosea strain IMSNU 200746 16S ribosomal RNA gene, partial sequenceAY4456461512ena58118
67770Microbispora rosea subsp. rosea strain JCM3022 16S ribosomal RNA gene, partial sequenceKT3452241414ena58118
67770Microbispora chromogenes 16S rRNA geneU489891414ena58118

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbispora rosea subsp. rosea strain DSM 4316558118.4wgspatric58118
66792Microbispora chromogenes DSM 431652863380036draftimg58118

GC content

@refGC-contentmethod
6777070high performance liquid chromatography (HPLC)
6777067thermal denaturation, midpoint method (Tm)
6777071thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes88.011no
anaerobicno98.867no
halophileno93.001no
spore-formingyes93.787no
glucose-utilyes90.399no
thermophileno98.5yes
flagellatedno97.917no
aerobicyes87.854no
motileno91.407no
glucose-fermentno91.528no

External links

@ref: 10833

culture collection no.: DSM 43165, JCM 3022, KCC A-0022, NRRL B-2634, BCRC 13325, CBS 304.61, CGMCC 4.1341, IFM 1185, IFO 14876, IMSNU 20074, KCTC 9308, MTCC 1048, NBRC 14876, RIA 761

straininfo link

  • @ref: 85549
  • straininfo: 50193

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10833Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43165)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43165
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85549Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50193.1StrainInfo: A central database for resolving microbial strain identifiers