Strain identifier

BacDive ID: 16515

Type strain: Yes

Species: Microbispora rosea

Strain Designation: M-8

Strain history: KCC A-0021 <-- H. Nonomura M-8.

NCBI tax ID(s): 1427754 (species)

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General

@ref: 10832

BacDive-ID: 16515

DSM-Number: 43164

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Microbispora rosea M-8 is a spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1427754
  • Matching level: species

strain history

@refhistory
10832<- KCC <- H. Nonomura, FYU, M-8
67770KCC A-0021 <-- H. Nonomura M-8.

doi: 10.13145/bacdive16515.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Streptosporangiaceae
  • genus: Microbispora
  • species: Microbispora rosea
  • full scientific name: Microbispora rosea Nonomura and Ohara 1957 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Microbispora parva
    20215Microbispora karnatakensis
    20215Microbispora chromogenes
    20215Microbispora indica
    20215Microbispora diastatica
    20215Microbispora amethystogenes

@ref: 10832

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptosporangiaceae

genus: Microbispora

species: Microbispora rosea subsp. rosea

full scientific name: Microbispora rosea subsp. rosea (Nonomura and Ohara 1957) Miyadoh et al. 1991

strain designation: M-8

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.657
69480100positive

multimedia

  • @ref: 10832
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_43164.jpg
  • caption: Medium 65 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10832GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10832ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10832positivegrowth37mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-9, MK-9(H2), MK-9, MK-9(H2), MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample type
10832soil
67770Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 10832
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021AB915610938ena1427754
20218Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021, R1-2B/H805AB9156191107ena1427754
20218Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021, R1-2B/M603AB9156201453ena1427754
20218Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021AB9156231106ena1427754
20218Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021AB915626441ena1427754
20218Microbispora amethystogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 3021AB9156291247ena1427754
20218Microbispora amethystogenes strain JCM 3021 16S ribosomal RNA gene, complete sequenceU489881413ena1427754

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Microbispora amethystogenes NBRC 101907GCA_016863015contigncbi1427754
66792Microbispora amethystogenes strain NBRC 1019071427754.3wgspatric1427754

GC content

@refGC-contentmethod
6777071thermal denaturation, midpoint method (Tm)
6777070.5high performance liquid chromatography (HPLC)
6777067thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.036no
gram-positiveyes91.09no
anaerobicno99.248no
halophileno93.292no
spore-formingyes94.675no
thermophileno98.139yes
glucose-utilyes88.957no
aerobicyes92no
flagellatedno98.084no
glucose-fermentno92.229no

External links

@ref: 10832

culture collection no.: DSM 43164, CBS 303.61, KCC A-0021, NRRL B-2637, RIA 760, JCM 3021, BCRC 13315, CGMCC 4.1340, HUT 6564, IFM 1264, IMET 9533, KCTC 9304, MTCC 1046, NBRC 101907, VKM Ac-635, VKM Ac-677

straininfo link

  • @ref: 85548
  • straininfo: 50192

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25634944Microbispora bryophytorum sp. nov., an actinomycete isolated from moss (Bryophyta).Li C, Zhang Y, Liu C, Wang H, Zhao J, Li L, Zhang Z, Wang X, Xiang WInt J Syst Evol Microbiol10.1099/ijs.0.0000952015Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Bryophyta/*microbiology, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spiro Compounds, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26589683Microbispora camponoti sp. nov., a novel actinomycete isolated from the cuticle of Camponotus japonicus Mayr.Han C, Liu C, Zhao J, Guo L, Lu C, Li J, Jia F, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-015-0625-x2015Actinomycetales/classification/genetics/*isolation & purification/metabolism, Animal Structures/*microbiology, Animals, Ants/*microbiology, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, PhylogenyMetabolism
Phylogeny30739286Microbispora tritici sp. nov., a novel actinomycete isolated from a root of wheat (Triticum aestivum L.).Han C, Zhao J, Yu B, Shi H, Zhang C, Guo X, Xiang W, Wang XAntonie Van Leeuwenhoek10.1007/s10482-019-01246-y2019Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Triticum/*microbiology, Vitamin K 2/analysisTranscriptome
Phylogeny31622227Microbispora fusca sp. nov., a novel actinomycete isolated from the ear of wheat (Triticum aestivum L.).Zhao J, Yu B, Han C, Cao P, Yu Z, Ju H, Xiang W, Wang XInt J Syst Evol Microbiol10.1099/ijsem.0.0037252020Actinomycetales/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Triticum/*microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10832Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43164)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43164
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85548Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50192.1StrainInfo: A central database for resolving microbial strain identifiers