Strain identifier
BacDive ID: 165135
Type strain:
Species: Clostridioides difficile
Strain history: M. Seki <-- Meiji Seika Kaisha, Ltd..
NCBI tax ID(s): 1496 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 165135
keywords: 16S sequence, Bacteria, mesophilic
description: Clostridioides difficile JCM 5252 is a mesophilic bacterium of the family Peptostreptococcaceae.
NCBI tax id
- NCBI tax id: 1496
- Matching level: species
strain history
- @ref: 67770
- history: M. Seki <-- Meiji Seika Kaisha, Ltd..
doi: 10.13145/bacdive165135.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Peptostreptococcaceae
- genus: Clostridioides
- species: Clostridioides difficile
- full scientific name: Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016
synonyms
@ref synonym 20215 Bacillus difficilis 20215 Peptoclostridium difficile 20215 Clostridium difficile
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Peptostreptococcaceae
genus: Clostridioides
species: Clostridioides difficile
full scientific name: Clostridioides difficile (Hall and O'Toole 1935) Lawson et al. 2016
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_78.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_63;97_66;98_71;99_78&stattab=map
- Last taxonomy: Clostridioides difficile
- 16S sequence: AB632383
- Sequence Identity:
- Total samples: 39293
- soil counts: 528
- aquatic counts: 1013
- animal counts: 37560
- plant counts: 192
Sequence information
16S sequences
- @ref: 67770
- description: [Clostridium] difficile gene for 16S ribosomal RNA, partial sequence, strain: JCM 5252
- accession: AB632383
- length: 1464
- database: ena
- NCBI tax ID: 1496
External links
@ref: 67770
culture collection no.: JCM 5252
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |